Analysis of interatomic Contacts of Structural Units in PDB entry:
5T8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T8U entry

There are 2 chains in PDB entry 5T8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 21GLU 370
B
 GLY 21ASN 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5T8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 45Right-handed alpha
Helix 2
AA2
A
48 53Right-handed alpha
Helix 3
AA3
A
82 87Right-handed alpha
Helix 4
AA4
A
88 95Right-handed alpha
Helix 5
AA5
A
126 143Right-handed alpha
Helix 6
AA6
A
187 192Right-handed alpha
Helix 7
AA7
A
222 238Right-handed alpha
Helix 8
AA8
A
259 264Right-handed alpha
Helix 9
AA9
A
265 277Right-handed alpha
Helix 10
AB1
A
277 282Right-handed alpha
Helix 11
AB2
A
323 332Right-handed alpha
Helix 12
AB3
A
341 352Right-handed alpha
Helix 13
AB4
A
356 368Right-handed alpha
Helix 14
AB5
B
31 45Right-handed alpha
Helix 15
AB6
B
48 53Right-handed alpha
Helix 16
AB7
B
82 87Right-handed alpha
Helix 17
AB8
B
88 95Right-handed alpha
Helix 18
AB9
B
126 143Right-handed alpha
Helix 19
AC1
B
187 192Right-handed 310
Helix 20
AC2
B
213 218Right-handed alpha
Helix 21
AC3
B
222 238Right-handed alpha
Helix 22
AC4
B
259 264Right-handed alpha
Helix 23
AC5
B
265 276Right-handed alpha
Helix 24
AC6
B
277 282Right-handed alpha
Helix 25
AC7
B
323 331Right-handed alpha
Helix 26
AC8
B
332 334Right-handed 310
Helix 27
AC9
B
341 352Right-handed alpha
Helix 28
AD1
B
356 369Right-handed alpha
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There are 6 sheets in PDB entry 5T8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
153 155anti-parallel
Strand 3
A
160 169anti-parallel
Strand 4
A
172 180anti-parallel
Strand 5
A
115 122anti-parallel
Strand 6
A
65 69anti-parallel
Strand 7
A
23 27parallel
Strand 8
A
254 255parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
74 76parallel
Strand 3
A
109 111anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 296first strand
Strand 2
A
299 307anti-parallel
Strand 3
A
312 319anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
153 155anti-parallel
Strand 3
B
160 168anti-parallel
Strand 4
B
173 180anti-parallel
Strand 5
B
115 122anti-parallel
Strand 6
B
65 69anti-parallel
Strand 7
B
23 27parallel
Strand 8
B
254 255parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 101first strand
Strand 2
B
74 77parallel
Strand 3
B
109 111anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
290 296first strand
Strand 2
B
299 308anti-parallel
Strand 3
B
311 319anti-parallel
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