Analysis of interatomic Contacts of Structural Units in PDB entry:
5T8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T8V entry

There is 1 chain in PDB entry 5T8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 388LEU 1057
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 5T8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
392 421Right-handed alpha
Helix 2
AA2
A
439 456Right-handed alpha
Helix 3
AA3
A
458 462Right-handed 310
Helix 4
AA4
A
464 481Right-handed alpha
Helix 5
AA5
A
495 502Right-handed alpha
Helix 6
AA6
A
503 521Right-handed alpha
Helix 7
AA7
A
527 531Right-handed 310
Helix 8
AA8
A
532 550Right-handed alpha
Helix 9
AA9
A
550 557Right-handed alpha
Helix 10
AB1
A
563 572Right-handed alpha
Helix 11
AB2
A
573 598Right-handed alpha
Helix 12
AB3
A
601 617Right-handed alpha
Helix 13
AB4
A
630 652Right-handed alpha
Helix 14
AB5
A
655 667Right-handed alpha
Helix 15
AB6
A
671 675Right-handed 310
Helix 16
AB7
A
688 700Right-handed alpha
Helix 17
AB8
A
701 703Right-handed 310
Helix 18
AB9
A
733 740Right-handed alpha
Helix 19
AC1
A
740 776Right-handed alpha
Helix 20
AC2
A
785 799Right-handed alpha
Helix 21
AC3
A
806 825Right-handed alpha
Helix 22
AC4
A
829 859Right-handed alpha
Helix 23
AC5
A
864 879Right-handed alpha
Helix 24
AC6
A
883 888Right-handed alpha
Helix 25
AC7
A
892 905Right-handed alpha
Helix 26
AC8
A
910 935Right-handed alpha
Helix 27
AC9
A
939 959Right-handed alpha
Helix 28
AD1
A
961 967Right-handed alpha
Helix 29
AD2
A
973 987Right-handed alpha
Helix 30
AD3
A
990 992Right-handed 310
Helix 31
AD4
A
993 1004Right-handed alpha
Helix 32
AD5
A
1005 1007Right-handed 310
Helix 33
AD6
A
1011 1027Right-handed alpha
Helix 34
AD7
A
1028 1032Right-handed 310
Helix 35
AD8
A
1035 1045Right-handed alpha
Helix 36
AD9
A
1049 1067Right-handed alpha
Helix 37
AE1
A
1070 1081Right-handed alpha
Helix 38
AE2
A
1082 1084Right-handed 310
Helix 39
AE3
A
1086 1104Right-handed alpha
Helix 40
AE4
A
1106 1120Right-handed alpha
Helix 41
AE5
A
1125 1140Right-handed alpha
Helix 42
AE6
A
1157 1171Right-handed alpha
Helix 43
AE7
A
1174 1186Right-handed alpha
Helix 44
AE8
A
1191 1209Right-handed alpha
Helix 45
AE9
A
1222 1237Right-handed alpha
Helix 46
AF1
A
1238 1241Right-handed 310
Helix 47
AF2
A
1242 1247Right-handed alpha
Helix 48
AF3
A
1249 1255Right-handed alpha
Helix 49
AF4
A
1256 1258Right-handed 310
Helix 50
AF5
A
1261 1276Right-handed alpha
Helix 51
AF6
A
1277 1279Right-handed 310
Helix 52
AF7
A
1283 1295Right-handed alpha
Helix 53
AF8
A
1296 1300Right-handed 310
Helix 54
AF9
A
1302 1320Right-handed alpha
Helix 55
AG1
A
1323 1345Right-handed alpha
Helix 56
AG2
A
1352 1371Right-handed alpha
Helix 57
AG3
A
1373 1377Right-handed 310
Helix 58
AG4
A
1392 1401Right-handed alpha
Helix 59
AG5
A
1402 1405Right-handed 310
Helix 60
AG6
A
1409 1427Right-handed alpha
Helix 61
AG7
A
1428 1431Right-handed 310
Helix 62
AG8
A
1433 1447Right-handed alpha
Helix 63
AG9
A
1448 1471Right-handed alpha
Helix 64
AH1
A
1498 1518Right-handed alpha
Helix 65
AH2
A
1522 1539Right-handed alpha
Helix 66
AH3
A
1542 1545Right-handed 310
Helix 67
AH4
A
1546 1554Right-handed alpha
Helix 68
AH5
A
1558 1576Right-handed alpha
Helix 69
AH6
A
1576 1581Right-handed alpha
Helix 70
AH7
A
1583 1598Right-handed alpha
Helix 71
AH8
A
1614 1625Right-handed alpha
Helix 72
AH9
A
1626 1639Right-handed alpha
Helix 73
AI1
A
1654 1669Right-handed alpha
Helix 74
AI2
A
1674 1704Right-handed alpha
Helix 75
AI3
A
1748 1772Right-handed alpha
Helix 76
AI4
A
1805 1816Right-handed alpha
Helix 77
AI5
A
1817 1821Right-handed 310
Helix 78
AI6
A
1822 1837Right-handed alpha
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There are 2 sheets in PDB entry 5T8V. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 430first strand
Strand 2
A
436 438anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
679 680first strand
Strand 2
A
686 687anti-parallel
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