Analysis of interatomic Contacts of Structural Units in PDB entry:
5T94

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T94 entry

There are 2 chains in PDB entry 5T94 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	ASP 482
B	GLU 88	PHE 509

There are 38 helices in PDB entry 5T94. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	35	Right-handed 310
Helix 2	AA2	A	36	41	Right-handed alpha
Helix 3	AA3	A	64	67	Right-handed 310
Helix 4	AA4	A	144	149	Right-handed alpha
Helix 5	AA5	A	154	157	Right-handed 310
Helix 6	AA6	A	158	163	Right-handed alpha
Helix 7	AA7	A	471	481	Right-handed alpha
Helix 8	AA8	B	89	97	Right-handed alpha
Helix 9	AA9	B	100	116	Right-handed alpha
Helix 10	AB1	B	122	129	Right-handed alpha
Helix 11	AB2	B	131	138	Right-handed alpha
Helix 12	AB3	B	144	160	Right-handed alpha
Helix 13	AB4	B	162	172	Right-handed alpha
Helix 14	AB5	B	174	185	Right-handed alpha
Helix 15	AB6	B	186	203	Right-handed alpha
Helix 16	AB7	B	204	214	Right-handed alpha
Helix 17	AB8	B	216	223	Right-handed alpha
Helix 18	AB9	B	224	226	Right-handed 310
Helix 19	AC1	B	228	243	Right-handed alpha
Helix 20	AC2	B	251	256	Right-handed alpha
Helix 21	AC3	B	258	266	Right-handed alpha
Helix 22	AC4	B	270	285	Right-handed alpha
Helix 23	AC5	B	288	298	Right-handed alpha
Helix 24	AC6	B	300	307	Right-handed alpha
Helix 25	AC7	B	312	327	Right-handed alpha
Helix 26	AC8	B	330	340	Right-handed alpha
Helix 27	AC9	B	341	350	Right-handed alpha
Helix 28	AD1	B	354	369	Right-handed alpha
Helix 29	AD2	B	372	382	Right-handed alpha
Helix 30	AD3	B	384	395	Right-handed alpha
Helix 31	AD4	B	396	412	Right-handed alpha
Helix 32	AD5	B	413	415	Right-handed 310
Helix 33	AD6	B	418	427	Right-handed alpha
Helix 34	AD7	B	429	440	Right-handed alpha
Helix 35	AD8	B	441	463	Right-handed alpha
Helix 36	AD9	B	474	480	Right-handed alpha
Helix 37	AE1	B	482	488	Right-handed alpha
Helix 38	AE2	B	494	509	Right-handed alpha

There are 8 sheets in PDB entry 5T94. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	75	first strand
Strand 2	A	47	53	anti-parallel
Strand 3	A	460	467	anti-parallel
Strand 4	A	449	456	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	91	first strand
Strand 2	A	95	100	anti-parallel
Strand 3	A	105	109	anti-parallel
Strand 4	A	151	152	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	172	first strand
Strand 2	A	176	181	anti-parallel
Strand 3	A	186	190	anti-parallel
Strand 4	A	209	215	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	198	200	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	228	first strand
Strand 2	A	232	237	anti-parallel
Strand 3	A	242	246	anti-parallel
Strand 4	A	269	270	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	281	first strand
Strand 2	A	285	290	anti-parallel
Strand 3	A	295	300	anti-parallel
Strand 4	A	317	323	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	337	first strand
Strand 2	A	341	346	anti-parallel
Strand 3	A	351	356	anti-parallel
Strand 4	A	381	389	anti-parallel
Strand 5	A	374	375	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	401	first strand
Strand 2	A	405	410	anti-parallel
Strand 3	A	415	419	anti-parallel
Strand 4	A	435	440	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T94

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T94