Analysis of interatomic Contacts of Structural Units in PDB entry:
5T96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T96 entry

There are 3 chains in PDB entry 5T96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 17	VAL 341
B	ARG 17	PRO 346
C	ARG 17	ILE 29

There are 72 helices in PDB entry 5T96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	35	Right-handed 310
Helix 2	AA2	A	40	44	Right-handed 310
Helix 3	AA3	A	63	67	Right-handed 310
Helix 4	AA4	A	87	93	Right-handed 310
Helix 5	AA5	A	94	98	Right-handed 310
Helix 6	AA6	A	105	120	Right-handed alpha
Helix 7	AA7	A	233	238	Right-handed alpha
Helix 8	AA8	A	239	242	Right-handed 310
Helix 9	AA9	A	266	278	Right-handed alpha
Helix 10	AB1	A	283	287	Right-handed 310
Helix 11	AB2	A	295	297	Right-handed 310
Helix 12	AB3	A	306	341	Right-handed alpha
Helix 13	AB4	B	32	35	Right-handed 310
Helix 14	AB5	B	40	44	Right-handed 310
Helix 15	AB6	B	63	67	Right-handed 310
Helix 16	AB7	B	87	93	Right-handed 310
Helix 17	AB8	B	94	98	Right-handed 310
Helix 18	AB9	B	105	120	Right-handed alpha
Helix 19	AC1	B	233	238	Right-handed alpha
Helix 20	AC2	B	239	242	Right-handed 310
Helix 21	AC3	B	266	278	Right-handed alpha
Helix 22	AC4	B	283	287	Right-handed 310
Helix 23	AC5	B	295	297	Right-handed 310
Helix 24	AC6	B	306	343	Right-handed alpha
Helix 25	AC7	C	32	35	Right-handed 310
Helix 26	AC8	C	40	44	Right-handed 310
Helix 27	AC9	C	63	67	Right-handed 310
Helix 28	AD1	C	87	93	Right-handed 310
Helix 29	AD2	C	94	99	Right-handed 310
Helix 30	AD3	C	105	120	Right-handed alpha
Helix 31	AD4	C	233	238	Right-handed alpha
Helix 32	AD5	C	239	242	Right-handed 310
Helix 33	AD6	C	266	278	Right-handed alpha
Helix 34	AD7	C	283	287	Right-handed 310
Helix 35	AD8	C	295	297	Right-handed 310
Helix 36	AD9	C	306	341	Right-handed alpha
Helix 37	AE1	D	32	35	Right-handed 310
Helix 38	AE2	D	40	44	Right-handed 310
Helix 39	AE3	D	63	67	Right-handed 310
Helix 40	AE4	D	87	93	Right-handed 310
Helix 41	AE5	D	94	98	Right-handed 310
Helix 42	AE6	D	105	120	Right-handed alpha
Helix 43	AE7	D	233	238	Right-handed alpha
Helix 44	AE8	D	239	242	Right-handed 310
Helix 45	AE9	D	266	278	Right-handed alpha
Helix 46	AF1	D	283	287	Right-handed 310
Helix 47	AF2	D	295	297	Right-handed 310
Helix 48	AF3	D	306	337	Right-handed alpha
Helix 49	AF4	E	32	35	Right-handed 310
Helix 50	AF5	E	40	44	Right-handed 310
Helix 51	AF6	E	63	67	Right-handed 310
Helix 52	AF7	E	87	93	Right-handed 310
Helix 53	AF8	E	94	98	Right-handed 310
Helix 54	AF9	E	105	120	Right-handed alpha
Helix 55	AG1	E	233	238	Right-handed alpha
Helix 56	AG2	E	239	242	Right-handed 310
Helix 57	AG3	E	266	278	Right-handed alpha
Helix 58	AG4	E	283	287	Right-handed 310
Helix 59	AG5	E	295	297	Right-handed 310
Helix 60	AG6	E	306	341	Right-handed alpha
Helix 61	AG7	F	32	35	Right-handed 310
Helix 62	AG8	F	40	44	Right-handed 310
Helix 63	AG9	F	63	67	Right-handed 310
Helix 64	AH1	F	87	93	Right-handed 310
Helix 65	AH2	F	94	98	Right-handed 310
Helix 66	AH3	F	105	120	Right-handed alpha
Helix 67	AH4	F	233	238	Right-handed alpha
Helix 68	AH5	F	239	242	Right-handed 310
Helix 69	AH6	F	266	278	Right-handed alpha
Helix 70	AH7	F	283	287	Right-handed 310
Helix 71	AH8	F	295	297	Right-handed 310
Helix 72	AH9	F	306	332	Right-handed alpha

There are 36 sheets in PDB entry 5T96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	291	293	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	26	30	parallel
Strand 3	A	81	85	parallel
Strand 4	A	220	224	parallel
Strand 5	A	245	246	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	125	first strand
Strand 2	A	211	214	anti-parallel
Strand 3	A	168	181	anti-parallel
Strand 4	A	184	185	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	168	181	anti-parallel
Strand 3	A	189	193	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	185	first strand
Strand 2	A	168	181	anti-parallel
Strand 3	A	197	208	anti-parallel
Strand 4	A	148	161	anti-parallel
Strand 5	A	129	131	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	148	161	anti-parallel
Strand 3	A	136	140	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	291	293	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	26	30	parallel
Strand 3	B	81	85	parallel
Strand 4	B	220	224	parallel
Strand 5	B	245	246	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	125	first strand
Strand 2	B	211	214	anti-parallel
Strand 3	B	168	181	anti-parallel
Strand 4	B	184	185	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	185	first strand
Strand 2	B	168	181	anti-parallel
Strand 3	B	189	193	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	185	first strand
Strand 2	B	168	181	anti-parallel
Strand 3	B	197	208	anti-parallel
Strand 4	B	148	161	anti-parallel
Strand 5	B	129	131	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	131	first strand
Strand 2	B	148	161	anti-parallel
Strand 3	B	136	140	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	291	293	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	26	30	parallel
Strand 3	C	81	85	parallel
Strand 4	C	220	224	parallel
Strand 5	C	245	246	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	125	first strand
Strand 2	C	211	214	anti-parallel
Strand 3	C	168	181	anti-parallel
Strand 4	C	184	185	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	185	first strand
Strand 2	C	168	181	anti-parallel
Strand 3	C	189	193	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	185	first strand
Strand 2	C	168	181	anti-parallel
Strand 3	C	197	208	anti-parallel
Strand 4	C	148	161	anti-parallel
Strand 5	C	129	131	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	148	161	anti-parallel
Strand 3	C	136	140	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	291	293	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	26	30	parallel
Strand 3	D	81	85	parallel
Strand 4	D	220	224	parallel
Strand 5	D	245	246	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	125	first strand
Strand 2	D	211	214	anti-parallel
Strand 3	D	168	181	anti-parallel
Strand 4	D	184	185	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	185	first strand
Strand 2	D	168	181	anti-parallel
Strand 3	D	189	193	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	185	first strand
Strand 2	D	168	181	anti-parallel
Strand 3	D	197	208	anti-parallel
Strand 4	D	148	161	anti-parallel
Strand 5	D	129	131	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	148	161	anti-parallel
Strand 3	D	136	140	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	20	first strand
Strand 2	E	291	293	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	26	30	parallel
Strand 3	E	81	85	parallel
Strand 4	E	220	224	parallel
Strand 5	E	245	246	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	125	first strand
Strand 2	E	211	214	anti-parallel
Strand 3	E	168	181	anti-parallel
Strand 4	E	184	185	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	185	first strand
Strand 2	E	168	181	anti-parallel
Strand 3	E	189	193	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	185	first strand
Strand 2	E	168	181	anti-parallel
Strand 3	E	197	208	anti-parallel
Strand 4	E	148	161	anti-parallel
Strand 5	E	129	131	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	131	first strand
Strand 2	E	148	161	anti-parallel
Strand 3	E	136	140	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	20	first strand
Strand 2	F	291	293	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	56	first strand
Strand 2	F	26	30	parallel
Strand 3	F	81	85	parallel
Strand 4	F	220	224	parallel
Strand 5	F	245	246	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	122	125	first strand
Strand 2	F	211	214	anti-parallel
Strand 3	F	168	181	anti-parallel
Strand 4	F	184	185	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	185	first strand
Strand 2	F	168	181	anti-parallel
Strand 3	F	189	193	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	184	185	first strand
Strand 2	F	168	181	anti-parallel
Strand 3	F	197	208	anti-parallel
Strand 4	F	148	161	anti-parallel
Strand 5	F	129	131	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	131	first strand
Strand 2	F	148	161	anti-parallel
Strand 3	F	136	140	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T96

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T96