Analysis of interatomic Contacts of Structural Units in PDB entry:
5T98

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T98 entry

There are 2 chains in PDB entry 5T98 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 46	LEU 847
B	MET 46	LEU 847

There are 32 helices in PDB entry 5T98. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	50	Right-handed 310
Helix 2	AA2	A	87	91	Right-handed 310
Helix 3	AA3	A	120	124	Right-handed 310
Helix 4	AA4	A	163	166	Right-handed 310
Helix 5	AA5	A	343	347	Right-handed 310
Helix 6	AA6	A	351	365	Right-handed alpha
Helix 7	AA7	A	378	389	Right-handed alpha
Helix 8	AA8	A	408	411	Right-handed 310
Helix 9	AA9	A	412	429	Right-handed alpha
Helix 10	AB1	A	443	448	Right-handed 310
Helix 11	AB2	A	451	467	Right-handed alpha
Helix 12	AB3	A	480	485	Right-handed alpha
Helix 13	AB4	A	487	491	Right-handed 310
Helix 14	AB5	A	499	501	Right-handed 310
Helix 15	AB6	A	502	510	Right-handed alpha
Helix 16	AB7	A	558	569	Right-handed alpha
Helix 17	AB8	A	622	633	Right-handed alpha
Helix 18	AB9	B	88	92	Right-handed 310
Helix 19	AC1	B	120	124	Right-handed 310
Helix 20	AC2	B	343	347	Right-handed 310
Helix 21	AC3	B	351	365	Right-handed alpha
Helix 22	AC4	B	378	389	Right-handed alpha
Helix 23	AC5	B	408	411	Right-handed 310
Helix 24	AC6	B	412	429	Right-handed alpha
Helix 25	AC7	B	443	447	Right-handed 310
Helix 26	AC8	B	451	467	Right-handed alpha
Helix 27	AC9	B	480	485	Right-handed alpha
Helix 28	AD1	B	487	491	Right-handed 310
Helix 29	AD2	B	499	501	Right-handed 310
Helix 30	AD3	B	502	510	Right-handed alpha
Helix 31	AD4	B	558	569	Right-handed alpha
Helix 32	AD5	B	622	633	Right-handed alpha

There are 24 sheets in PDB entry 5T98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	197	202	anti-parallel
Strand 3	A	127	132	anti-parallel
Strand 4	A	158	161	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	59	63	anti-parallel
Strand 3	A	111	118	anti-parallel
Strand 4	A	171	178	anti-parallel
Strand 5	A	139	143	anti-parallel
Strand 6	A	146	151	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	206	first strand
Strand 2	A	223	234	anti-parallel
Strand 3	A	212	219	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	206	first strand
Strand 2	A	223	234	anti-parallel
Strand 3	A	270	280	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	265	first strand
Strand 2	A	240	249	anti-parallel
Strand 3	A	293	301	anti-parallel
Strand 4	A	304	313	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	324	327	anti-parallel
Strand 3	A	330	332	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	338	first strand
Strand 2	A	369	371	parallel
Strand 3	A	391	395	parallel
Strand 4	A	434	441	parallel
Strand 5	A	472	476	parallel
Strand 6	A	493	497	parallel
Strand 7	A	515	521	parallel
Strand 8	A	574	578	parallel
Strand 9	A	334	338	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	641	first strand
Strand 2	A	651	658	anti-parallel
Strand 3	A	702	707	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	670	676	first strand
Strand 2	A	662	667	anti-parallel
Strand 3	A	712	718	anti-parallel
Strand 4	A	724	731	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	684	first strand
Strand 2	A	696	698	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	738	743	first strand
Strand 2	A	755	763	anti-parallel
Strand 3	A	812	818	anti-parallel
Strand 4	A	786	791	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	747	749	first strand
Strand 2	A	839	846	parallel
Strand 3	A	825	832	anti-parallel
Strand 4	A	776	783	anti-parallel
Strand 5	A	805	807	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	197	202	anti-parallel
Strand 3	B	127	132	anti-parallel
Strand 4	B	158	161	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	59	63	anti-parallel
Strand 3	B	111	118	anti-parallel
Strand 4	B	171	178	anti-parallel
Strand 5	B	139	143	anti-parallel
Strand 6	B	146	151	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	206	first strand
Strand 2	B	223	234	anti-parallel
Strand 3	B	212	219	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	206	first strand
Strand 2	B	223	234	anti-parallel
Strand 3	B	270	280	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	265	first strand
Strand 2	B	240	249	anti-parallel
Strand 3	B	293	301	anti-parallel
Strand 4	B	304	313	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	321	first strand
Strand 2	B	324	327	anti-parallel
Strand 3	B	330	332	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	338	first strand
Strand 2	B	369	371	parallel
Strand 3	B	391	395	parallel
Strand 4	B	434	441	parallel
Strand 5	B	472	476	parallel
Strand 6	B	493	497	parallel
Strand 7	B	515	521	parallel
Strand 8	B	574	578	parallel
Strand 9	B	334	338	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	641	first strand
Strand 2	B	651	658	anti-parallel
Strand 3	B	702	707	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	676	first strand
Strand 2	B	662	667	anti-parallel
Strand 3	B	712	718	anti-parallel
Strand 4	B	724	731	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	684	first strand
Strand 2	B	696	698	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	738	743	first strand
Strand 2	B	755	763	anti-parallel
Strand 3	B	812	818	anti-parallel
Strand 4	B	786	791	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	747	749	first strand
Strand 2	B	839	846	parallel
Strand 3	B	825	833	anti-parallel
Strand 4	B	776	783	anti-parallel
Strand 5	B	805	807	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T98

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T98