Analysis of interatomic Contacts of Structural Units in PDB entry:
5T9G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T9G entry

There are 4 chains in PDB entry 5T9G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 32	LYS 848
B	ASP 33	LYS 848
C	SER 32	LYS 848
D	SER 32	LYS 848

There are 84 helices in PDB entry 5T9G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	50	Right-handed 310
Helix 2	AA2	A	66	71	Right-handed 310
Helix 3	AA3	A	78	82	Right-handed 310
Helix 4	AA4	A	141	144	Right-handed 310
Helix 5	AA5	A	324	328	Right-handed 310
Helix 6	AA6	A	332	346	Right-handed alpha
Helix 7	AA7	A	359	370	Right-handed alpha
Helix 8	AA8	A	397	401	Right-handed 310
Helix 9	AA9	A	402	405	Right-handed 310
Helix 10	AB1	A	406	423	Right-handed alpha
Helix 11	AB2	A	437	441	Right-handed 310
Helix 12	AB3	A	443	448	Right-handed alpha
Helix 13	AB4	A	467	478	Right-handed alpha
Helix 14	AB5	A	484	500	Right-handed alpha
Helix 15	AB6	A	511	516	Right-handed alpha
Helix 16	AB7	A	519	524	Right-handed alpha
Helix 17	AB8	A	532	534	Right-handed 310
Helix 18	AB9	A	535	543	Right-handed alpha
Helix 19	AC1	A	556	565	Right-handed alpha
Helix 20	AC2	A	608	619	Right-handed alpha
Helix 21	AC3	A	651	655	Right-handed 310
Helix 22	AC4	A	700	702	Right-handed 310
Helix 23	AC5	B	45	50	Right-handed 310
Helix 24	AC6	B	66	71	Right-handed 310
Helix 25	AC7	B	141	144	Right-handed 310
Helix 26	AC8	B	332	346	Right-handed alpha
Helix 27	AC9	B	359	370	Right-handed alpha
Helix 28	AD1	B	397	401	Right-handed 310
Helix 29	AD2	B	402	405	Right-handed 310
Helix 30	AD3	B	406	423	Right-handed alpha
Helix 31	AD4	B	437	441	Right-handed 310
Helix 32	AD5	B	443	448	Right-handed alpha
Helix 33	AD6	B	467	478	Right-handed alpha
Helix 34	AD7	B	484	500	Right-handed alpha
Helix 35	AD8	B	511	519	Right-handed alpha
Helix 36	AD9	B	520	524	Right-handed 310
Helix 37	AE1	B	532	534	Right-handed 310
Helix 38	AE2	B	535	543	Right-handed alpha
Helix 39	AE3	B	556	566	Right-handed alpha
Helix 40	AE4	B	608	619	Right-handed alpha
Helix 41	AE5	B	651	655	Right-handed 310
Helix 42	AE6	B	700	702	Right-handed 310
Helix 43	AE7	C	32	36	Right-handed 310
Helix 44	AE8	C	45	50	Right-handed 310
Helix 45	AE9	C	66	71	Right-handed 310
Helix 46	AF1	C	78	82	Right-handed 310
Helix 47	AF2	C	324	328	Right-handed 310
Helix 48	AF3	C	332	346	Right-handed alpha
Helix 49	AF4	C	359	370	Right-handed alpha
Helix 50	AF5	C	397	401	Right-handed 310
Helix 51	AF6	C	402	405	Right-handed 310
Helix 52	AF7	C	406	423	Right-handed alpha
Helix 53	AF8	C	437	441	Right-handed 310
Helix 54	AF9	C	443	448	Right-handed alpha
Helix 55	AG1	C	467	478	Right-handed alpha
Helix 56	AG2	C	484	500	Right-handed alpha
Helix 57	AG3	C	511	519	Right-handed alpha
Helix 58	AG4	C	520	524	Right-handed 310
Helix 59	AG5	C	532	534	Right-handed 310
Helix 60	AG6	C	535	543	Right-handed alpha
Helix 61	AG7	C	556	565	Right-handed alpha
Helix 62	AG8	C	608	619	Right-handed alpha
Helix 63	AG9	C	651	655	Right-handed 310
Helix 64	AH1	C	700	702	Right-handed 310
Helix 65	AH2	D	45	50	Right-handed 310
Helix 66	AH3	D	66	71	Right-handed 310
Helix 67	AH4	D	141	144	Right-handed 310
Helix 68	AH5	D	324	328	Right-handed 310
Helix 69	AH6	D	332	346	Right-handed alpha
Helix 70	AH7	D	359	370	Right-handed alpha
Helix 71	AH8	D	397	401	Right-handed 310
Helix 72	AH9	D	402	405	Right-handed 310
Helix 73	AI1	D	406	423	Right-handed alpha
Helix 74	AI2	D	437	441	Right-handed 310
Helix 75	AI3	D	467	478	Right-handed alpha
Helix 76	AI4	D	484	500	Right-handed alpha
Helix 77	AI5	D	511	516	Right-handed alpha
Helix 78	AI6	D	520	524	Right-handed 310
Helix 79	AI7	D	532	534	Right-handed 310
Helix 80	AI8	D	535	543	Right-handed alpha
Helix 81	AI9	D	556	566	Right-handed alpha
Helix 82	AJ1	D	608	619	Right-handed alpha
Helix 83	AJ2	D	651	655	Right-handed 310
Helix 84	AJ3	D	700	702	Right-handed 310

There are 50 sheets in PDB entry 5T9G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	38	41	anti-parallel
Strand 3	A	87	96	anti-parallel
Strand 4	A	150	159	anti-parallel
Strand 5	A	117	121	anti-parallel
Strand 6	A	124	129	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	139	first strand
Strand 2	A	104	110	anti-parallel
Strand 3	A	177	183	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	203	214	anti-parallel
Strand 3	A	192	199	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	203	214	anti-parallel
Strand 3	A	250	260	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	245	first strand
Strand 2	A	220	229	anti-parallel
Strand 3	A	273	281	anti-parallel
Strand 4	A	284	293	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	266	first strand
Strand 2	A	269	270	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	305	308	anti-parallel
Strand 3	A	311	312	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	320	first strand
Strand 2	A	350	353	parallel
Strand 3	A	372	376	parallel
Strand 4	A	428	435	parallel
Strand 5	A	505	509	parallel
Strand 6	A	526	530	parallel
Strand 7	A	548	554	parallel
Strand 8	A	571	575	parallel
Strand 9	A	315	320	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	630	first strand
Strand 2	A	673	680	anti-parallel
Strand 3	A	707	712	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	636	638	first strand
Strand 2	A	643	645	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	698	first strand
Strand 2	A	684	689	anti-parallel
Strand 3	A	717	724	anti-parallel
Strand 4	A	727	734	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	794	first strand
Strand 2	A	815	821	anti-parallel
Strand 3	A	758	766	anti-parallel
Strand 4	A	741	746	anti-parallel
Strand 5	A	839	840	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	750	751	first strand
Strand 2	A	843	847	parallel
Strand 3	A	827	834	anti-parallel
Strand 4	A	779	785	anti-parallel
Strand 5	A	808	810	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	61	first strand
Strand 2	B	38	41	anti-parallel
Strand 3	B	87	96	anti-parallel
Strand 4	B	150	159	anti-parallel
Strand 5	B	117	121	anti-parallel
Strand 6	B	124	129	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	139	first strand
Strand 2	B	104	110	anti-parallel
Strand 3	B	177	183	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	203	214	anti-parallel
Strand 3	B	192	195	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	203	214	anti-parallel
Strand 3	B	250	260	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	245	first strand
Strand 2	B	220	229	anti-parallel
Strand 3	B	273	281	anti-parallel
Strand 4	B	284	293	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	305	308	anti-parallel
Strand 3	B	311	313	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	548	552	first strand
Strand 2	B	526	530	parallel
Strand 3	B	505	509	parallel
Strand 4	B	428	435	parallel
Strand 5	B	372	376	parallel
Strand 6	B	350	353	parallel
Strand 7	B	315	320	parallel
Strand 8	B	571	574	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	624	630	first strand
Strand 2	B	673	680	anti-parallel
Strand 3	B	707	712	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	639	first strand
Strand 2	B	642	645	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	692	698	first strand
Strand 2	B	684	689	anti-parallel
Strand 3	B	717	724	anti-parallel
Strand 4	B	727	734	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	741	746	first strand
Strand 2	B	758	766	anti-parallel
Strand 3	B	815	821	anti-parallel
Strand 4	B	789	794	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	750	752	first strand
Strand 2	B	843	848	parallel
Strand 3	B	827	835	anti-parallel
Strand 4	B	779	785	anti-parallel
Strand 5	B	808	810	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	750	752	first strand
Strand 2	B	843	848	parallel
Strand 3	B	827	835	anti-parallel
Strand 4	B	838	839	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	38	41	anti-parallel
Strand 3	C	87	96	anti-parallel
Strand 4	C	150	159	anti-parallel
Strand 5	C	117	121	anti-parallel
Strand 6	C	124	129	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	139	first strand
Strand 2	C	104	110	anti-parallel
Strand 3	C	177	183	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	186	first strand
Strand 2	C	203	214	anti-parallel
Strand 3	C	192	199	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	186	first strand
Strand 2	C	203	214	anti-parallel
Strand 3	C	250	260	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	245	first strand
Strand 2	C	220	229	anti-parallel
Strand 3	C	273	281	anti-parallel
Strand 4	C	284	293	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	301	first strand
Strand 2	C	305	308	anti-parallel
Strand 3	C	311	313	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	548	552	first strand
Strand 2	C	527	530	parallel
Strand 3	C	505	509	parallel
Strand 4	C	428	435	parallel
Strand 5	C	372	376	parallel
Strand 6	C	350	353	parallel
Strand 7	C	315	320	parallel
Strand 8	C	571	574	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	624	630	first strand
Strand 2	C	673	680	anti-parallel
Strand 3	C	706	712	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	636	639	first strand
Strand 2	C	642	645	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	692	698	first strand
Strand 2	C	684	689	anti-parallel
Strand 3	C	717	724	anti-parallel
Strand 4	C	727	734	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	741	746	first strand
Strand 2	C	758	766	anti-parallel
Strand 3	C	815	821	anti-parallel
Strand 4	C	789	794	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	750	752	first strand
Strand 2	C	843	848	parallel
Strand 3	C	827	834	anti-parallel
Strand 4	C	779	785	anti-parallel
Strand 5	C	808	810	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	61	first strand
Strand 2	D	38	41	anti-parallel
Strand 3	D	87	96	anti-parallel
Strand 4	D	150	159	anti-parallel
Strand 5	D	117	121	anti-parallel
Strand 6	D	124	129	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	139	first strand
Strand 2	D	104	110	anti-parallel
Strand 3	D	177	183	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	203	214	anti-parallel
Strand 3	D	192	199	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	203	214	anti-parallel
Strand 3	D	250	260	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	245	first strand
Strand 2	D	220	229	anti-parallel
Strand 3	D	273	281	anti-parallel
Strand 4	D	284	293	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	301	first strand
Strand 2	D	305	308	anti-parallel
Strand 3	D	311	312	anti-parallel

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There are 8 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	552	first strand
Strand 2	D	526	530	parallel
Strand 3	D	505	509	parallel
Strand 4	D	428	435	parallel
Strand 5	D	372	376	parallel
Strand 6	D	350	353	parallel
Strand 7	D	315	320	parallel
Strand 8	D	571	574	parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	624	630	first strand
Strand 2	D	673	680	anti-parallel
Strand 3	D	706	712	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	636	638	first strand
Strand 2	D	643	645	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	692	698	first strand
Strand 2	D	684	689	anti-parallel
Strand 3	D	717	724	anti-parallel
Strand 4	D	727	734	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	789	794	first strand
Strand 2	D	815	821	anti-parallel
Strand 3	D	758	766	anti-parallel
Strand 4	D	741	746	anti-parallel
Strand 5	D	839	840	parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	750	751	first strand
Strand 2	D	843	847	parallel
Strand 3	D	827	834	anti-parallel
Strand 4	D	779	785	anti-parallel
Strand 5	D	808	810	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T9G

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T9G