Analysis of interatomic Contacts of Structural Units in PDB entry:
5T9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T9J entry

There are 6 chains in PDB entry 5T9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2LYS 467
B
 GLY 2GLN 468
C
 G 1 C 20
D
 A 1 C 20
E
 G 1 G 19
F
 A 2 C 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5T9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 10Right-handed alpha
Helix 2
AA2
A
20 23Right-handed 310
Helix 3
AA3
A
31 40Right-handed alpha
Helix 4
AA4
A
50 66Right-handed alpha
Helix 5
AA5
A
100 125Right-handed alpha
Helix 6
AA6
A
134 145Right-handed alpha
Helix 7
AA7
A
184 191Right-handed alpha
Helix 8
AA8
A
194 206Right-handed alpha
Helix 9
AA9
A
220 228Right-handed alpha
Helix 10
AB1
A
232 242Right-handed alpha
Helix 11
AB2
A
311 323Right-handed alpha
Helix 12
AB3
A
324 325Right-handed 310
Helix 13
AB4
A
326 327Right-handed 310
Helix 14
AB5
A
328 337Right-handed alpha
Helix 15
AB6
A
352 365Right-handed alpha
Helix 16
AB7
A
367 390Right-handed alpha
Helix 17
AB8
A
431 436Right-handed alpha
Helix 18
AB9
A
442 449Right-handed alpha
Helix 19
AC1
A
449 467Right-handed alpha
Helix 20
AC2
B
5 10Right-handed alpha
Helix 21
AC3
B
20 23Right-handed 310
Helix 22
AC4
B
31 40Right-handed alpha
Helix 23
AC5
B
50 66Right-handed alpha
Helix 24
AC6
B
100 125Right-handed alpha
Helix 25
AC7
B
134 145Right-handed alpha
Helix 26
AC8
B
184 191Right-handed alpha
Helix 27
AC9
B
194 206Right-handed alpha
Helix 28
AD1
B
217 228Right-handed alpha
Helix 29
AD2
B
234 242Right-handed alpha
Helix 30
AD3
B
309 325Right-handed alpha
Helix 31
AD4
B
328 337Right-handed alpha
Helix 32
AD5
B
352 365Right-handed alpha
Helix 33
AD6
B
367 390Right-handed alpha
Helix 34
AD7
B
431 436Right-handed alpha
Helix 35
AD8
B
442 449Right-handed alpha
Helix 36
AD9
B
449 468Right-handed alpha
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There are 4 sheets in PDB entry 5T9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
178 183anti-parallel
Strand 3
A
165 171anti-parallel
Strand 4
A
150 152parallel
Strand 5
A
26 30parallel
Strand 6
A
69 74parallel
Strand 7
A
128 130parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 408first strand
Strand 2
A
411 418anti-parallel
Strand 3
A
437 441anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 18first strand
Strand 2
B
178 183anti-parallel
Strand 3
B
165 171anti-parallel
Strand 4
B
150 152parallel
Strand 5
B
26 30parallel
Strand 6
B
69 74parallel
Strand 7
B
128 130parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 408first strand
Strand 2
B
411 418anti-parallel
Strand 3
B
437 441anti-parallel
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