Analysis of interatomic Contacts of Structural Units in PDB entry:
5T9K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5T9K entry

There is 1 chain in PDB entry 5T9K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1LYS 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5T9K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 66Right-handed 310
Helix 2
AA2
A
67 89Right-handed alpha
Helix 3
AA3
A
132 135Right-handed 310
Helix 4
AA4
A
136 152Right-handed alpha
Helix 5
AA5
A
158 181Right-handed alpha
Helix 6
AA6
A
207 212Right-handed 310
Helix 7
AA7
A
216 220Right-handed 310
Helix 8
AA8
A
224 230Right-handed alpha
Helix 9
AA9
A
233 247Right-handed alpha
Helix 10
AB1
A
259 274Right-handed alpha
Helix 11
AB2
A
280 297Right-handed alpha
Helix 12
AB3
A
300 313Right-handed alpha
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There are 5 sheets in PDB entry 5T9K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
28 29anti-parallel
Strand 3
A
17 24anti-parallel
Strand 4
A
4 11anti-parallel
Strand 5
A
61 62parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
53 54anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
39 43anti-parallel
Strand 3
A
100 106parallel
Strand 4
A
120 123parallel
Strand 5
A
113 115anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
203 204anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
253 255anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il