Analysis of interatomic Contacts of Structural Units in PDB entry:
5T9T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T9T entry

There are 2 chains in PDB entry 5T9T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	ASN 526
B	GLN 2	ASP 527

There are 17 helices in PDB entry 5T9T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	24	Right-handed alpha
Helix 2	AA2	A	29	34	Right-handed alpha
Helix 3	AA3	A	132	135	Right-handed 310
Helix 4	AA4	A	241	246	Right-handed 310
Helix 5	AA5	A	255	261	Right-handed alpha
Helix 6	AA6	A	346	350	Right-handed 310
Helix 7	AA7	A	451	456	Right-handed 310
Helix 8	AA8	A	467	469	Right-handed 310
Helix 9	AA9	A	470	474	Right-handed alpha
Helix 10	AB1	B	19	25	Right-handed alpha
Helix 11	AB2	B	61	66	Right-handed alpha
Helix 12	AB3	B	132	136	Right-handed 310
Helix 13	AB4	B	241	246	Right-handed 310
Helix 14	AB5	B	255	261	Right-handed alpha
Helix 15	AB6	B	346	350	Right-handed 310
Helix 16	AB7	B	451	455	Right-handed 310
Helix 17	AB8	B	470	473	Right-handed 310

There are 24 sheets in PDB entry 5T9T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	8	first strand
Strand 2	A	85	94	parallel
Strand 3	A	73	80	anti-parallel
Strand 4	A	37	39	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	18	first strand
Strand 2	A	53	56	anti-parallel
Strand 3	A	45	48	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	113	first strand
Strand 2	A	193	203	parallel
Strand 3	A	177	186	anti-parallel
Strand 4	A	137	142	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	148	154	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	236	237	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	222	first strand
Strand 2	A	298	308	parallel
Strand 3	A	284	292	anti-parallel
Strand 4	A	248	251	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	233	first strand
Strand 2	A	270	273	anti-parallel
Strand 3	A	262	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	322	first strand
Strand 2	A	335	342	anti-parallel
Strand 3	A	371	376	anti-parallel
Strand 4	A	362	368	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	327	first strand
Strand 2	A	403	413	parallel
Strand 3	A	387	396	anti-parallel
Strand 4	A	352	356	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	446	447	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	431	first strand
Strand 2	A	513	522	parallel
Strand 3	A	497	505	anti-parallel
Strand 4	A	458	464	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	443	first strand
Strand 2	A	483	486	anti-parallel
Strand 3	A	475	477	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	8	first strand
Strand 2	B	86	94	parallel
Strand 3	B	72	79	anti-parallel
Strand 4	B	37	39	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	18	first strand
Strand 2	B	53	56	anti-parallel
Strand 3	B	45	48	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	113	first strand
Strand 2	B	193	203	parallel
Strand 3	B	177	185	anti-parallel
Strand 4	B	139	142	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	123	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	148	154	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	212	first strand
Strand 2	B	236	237	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	222	first strand
Strand 2	B	298	308	parallel
Strand 3	B	284	292	anti-parallel
Strand 4	B	248	251	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	233	first strand
Strand 2	B	270	273	anti-parallel
Strand 3	B	262	264	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	321	first strand
Strand 2	B	335	342	anti-parallel
Strand 3	B	371	376	anti-parallel
Strand 4	B	362	368	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	327	first strand
Strand 2	B	403	413	parallel
Strand 3	B	387	396	anti-parallel
Strand 4	B	352	356	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	422	first strand
Strand 2	B	446	447	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	431	first strand
Strand 2	B	513	522	parallel
Strand 3	B	497	506	anti-parallel
Strand 4	B	457	464	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	443	first strand
Strand 2	B	483	486	anti-parallel
Strand 3	B	475	477	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T9T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T9T