Analysis of interatomic Contacts of Structural Units in PDB entry:
5T9X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T9X entry

There are 3 chains in PDB entry 5T9X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 43	ASP 341
B	PHE 47	LYS 342
C	GLU 48	ASP 341

There are 21 helices in PDB entry 5T9X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	54	Right-handed 310
Helix 2	AA2	A	86	89	Right-handed 310
Helix 3	AA3	A	233	235	Right-handed 310
Helix 4	AA4	A	245	249	Right-handed 310
Helix 5	AA5	A	277	282	Right-handed alpha
Helix 6	AA6	A	305	310	Right-handed alpha
Helix 7	AA7	A	318	322	Right-handed 310
Helix 8	AA8	B	49	54	Right-handed 310
Helix 9	AA9	B	86	89	Right-handed 310
Helix 10	AB1	B	233	235	Right-handed 310
Helix 11	AB2	B	245	249	Right-handed 310
Helix 12	AB3	B	277	282	Right-handed alpha
Helix 13	AB4	B	305	310	Right-handed alpha
Helix 14	AB5	B	316	321	Right-handed alpha
Helix 15	AB6	B	322	327	Right-handed 310
Helix 16	AB7	C	233	235	Right-handed 310
Helix 17	AB8	C	245	249	Right-handed 310
Helix 18	AB9	C	277	282	Right-handed alpha
Helix 19	AC1	C	305	311	Right-handed alpha
Helix 20	AC2	C	316	321	Right-handed alpha
Helix 21	AC3	C	322	327	Right-handed 310

There are 18 sheets in PDB entry 5T9X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	68	first strand
Strand 2	A	328	340	anti-parallel
Strand 3	A	118	121	anti-parallel
Strand 4	A	112	115	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	68	first strand
Strand 2	A	328	340	anti-parallel
Strand 3	A	161	168	anti-parallel
Strand 4	A	251	259	anti-parallel
Strand 5	A	262	267	anti-parallel
Strand 6	A	270	276	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	150	153	anti-parallel
Strand 3	A	297	303	anti-parallel
Strand 4	A	175	181	anti-parallel
Strand 5	A	187	194	anti-parallel
Strand 6	A	214	222	anti-parallel
Strand 7	A	227	229	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	150	153	anti-parallel
Strand 3	A	297	303	anti-parallel
Strand 4	A	175	181	anti-parallel
Strand 5	A	187	194	anti-parallel
Strand 6	A	214	222	anti-parallel
Strand 7	A	237	238	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	A	146	148	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	136	first strand
Strand 2	A	139	144	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	328	340	anti-parallel
Strand 3	B	118	121	anti-parallel
Strand 4	B	112	115	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	328	340	anti-parallel
Strand 3	B	161	168	anti-parallel
Strand 4	B	251	259	anti-parallel
Strand 5	B	262	267	anti-parallel
Strand 6	B	270	276	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	150	153	anti-parallel
Strand 3	B	297	303	anti-parallel
Strand 4	B	175	181	anti-parallel
Strand 5	B	187	194	anti-parallel
Strand 6	B	214	222	anti-parallel
Strand 7	B	227	229	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	150	153	anti-parallel
Strand 3	B	297	303	anti-parallel
Strand 4	B	175	181	anti-parallel
Strand 5	B	187	194	anti-parallel
Strand 6	B	214	222	anti-parallel
Strand 7	B	237	238	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	107	first strand
Strand 2	B	146	148	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	136	first strand
Strand 2	B	139	144	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	68	first strand
Strand 2	C	328	340	anti-parallel
Strand 3	C	118	121	anti-parallel
Strand 4	C	112	115	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	68	first strand
Strand 2	C	328	340	anti-parallel
Strand 3	C	161	168	anti-parallel
Strand 4	C	251	259	anti-parallel
Strand 5	C	262	267	anti-parallel
Strand 6	C	270	276	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	150	153	anti-parallel
Strand 3	C	297	303	anti-parallel
Strand 4	C	175	181	anti-parallel
Strand 5	C	187	194	anti-parallel
Strand 6	C	214	222	anti-parallel
Strand 7	C	227	229	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	150	153	anti-parallel
Strand 3	C	297	303	anti-parallel
Strand 4	C	175	181	anti-parallel
Strand 5	C	187	194	anti-parallel
Strand 6	C	214	222	anti-parallel
Strand 7	C	237	238	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	107	first strand
Strand 2	C	146	148	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	136	first strand
Strand 2	C	139	144	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T9X

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T9X