Analysis of interatomic Contacts of Structural Units in PDB entry:
5T9Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5T9Y entry

There are 3 chains in PDB entry 5T9Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 17	VAL 337
B	ARG 17	THR 335
C	ARG 17	ARG 38

There are 36 helices in PDB entry 5T9Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	35	Right-handed 310
Helix 2	AA2	A	40	44	Right-handed 310
Helix 3	AA3	A	63	67	Right-handed 310
Helix 4	AA4	A	87	93	Right-handed 310
Helix 5	AA5	A	94	98	Right-handed 310
Helix 6	AA6	A	105	120	Right-handed alpha
Helix 7	AA7	A	233	238	Right-handed alpha
Helix 8	AA8	A	239	242	Right-handed 310
Helix 9	AA9	A	266	278	Right-handed alpha
Helix 10	AB1	A	283	287	Right-handed 310
Helix 11	AB2	A	295	297	Right-handed 310
Helix 12	AB3	A	306	337	Right-handed alpha
Helix 13	AB4	B	32	35	Right-handed 310
Helix 14	AB5	B	40	44	Right-handed 310
Helix 15	AB6	B	63	67	Right-handed 310
Helix 16	AB7	B	87	93	Right-handed 310
Helix 17	AB8	B	94	98	Right-handed 310
Helix 18	AB9	B	105	120	Right-handed alpha
Helix 19	AC1	B	233	238	Right-handed alpha
Helix 20	AC2	B	239	242	Right-handed 310
Helix 21	AC3	B	266	278	Right-handed alpha
Helix 22	AC4	B	283	287	Right-handed 310
Helix 23	AC5	B	295	297	Right-handed 310
Helix 24	AC6	B	306	334	Right-handed alpha
Helix 25	AC7	C	32	35	Right-handed 310
Helix 26	AC8	C	40	44	Right-handed 310
Helix 27	AC9	C	63	67	Right-handed 310
Helix 28	AD1	C	87	93	Right-handed 310
Helix 29	AD2	C	94	99	Right-handed 310
Helix 30	AD3	C	105	120	Right-handed alpha
Helix 31	AD4	C	233	238	Right-handed alpha
Helix 32	AD5	C	239	242	Right-handed 310
Helix 33	AD6	C	266	278	Right-handed alpha
Helix 34	AD7	C	283	287	Right-handed 310
Helix 35	AD8	C	295	297	Right-handed 310
Helix 36	AD9	C	306	333	Right-handed alpha

There are 12 sheets in PDB entry 5T9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	291	293	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	26	30	parallel
Strand 3	A	81	85	parallel
Strand 4	A	220	224	parallel
Strand 5	A	245	246	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	140	first strand
Strand 2	A	148	161	anti-parallel
Strand 3	A	197	208	anti-parallel
Strand 4	A	168	181	anti-parallel
Strand 5	A	184	185	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	140	first strand
Strand 2	A	148	161	anti-parallel
Strand 3	A	129	131	anti-parallel
Strand 4	A	122	125	first strand
Strand 5	A	211	214	anti-parallel
Strand 6	A	168	181	anti-parallel
Strand 7	A	189	193	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	291	293	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	26	30	parallel
Strand 3	B	81	85	parallel
Strand 4	B	220	224	parallel
Strand 5	B	245	246	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	140	first strand
Strand 2	B	148	161	anti-parallel
Strand 3	B	197	208	anti-parallel
Strand 4	B	168	181	anti-parallel
Strand 5	B	184	185	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	140	first strand
Strand 2	B	148	161	anti-parallel
Strand 3	B	129	131	anti-parallel
Strand 4	B	122	125	first strand
Strand 5	B	211	214	anti-parallel
Strand 6	B	168	181	anti-parallel
Strand 7	B	189	193	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	291	293	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	26	30	parallel
Strand 3	C	81	85	parallel
Strand 4	C	220	224	parallel
Strand 5	C	245	246	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	140	first strand
Strand 2	C	148	161	anti-parallel
Strand 3	C	197	208	anti-parallel
Strand 4	C	168	181	anti-parallel
Strand 5	C	184	185	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	140	first strand
Strand 2	C	148	161	anti-parallel
Strand 3	C	129	131	anti-parallel
Strand 4	C	122	125	first strand
Strand 5	C	211	214	anti-parallel
Strand 6	C	168	181	anti-parallel
Strand 7	C	189	193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5T9Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
5T9Y