Analysis of interatomic Contacts of Structural Units in PDB entry:
5TA5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TA5 entry

There are 2 chains in PDB entry 5TA5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 21	ARG 644
B	GLN 21	GLY 645

There are 39 helices in PDB entry 5TA5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	46	Right-handed alpha
Helix 2	AA2	A	54	59	Right-handed 310
Helix 3	AA3	A	65	75	Right-handed alpha
Helix 4	AA4	A	82	92	Right-handed alpha
Helix 5	AA5	A	103	121	Right-handed alpha
Helix 6	AA6	A	122	129	Right-handed 310
Helix 7	AA7	A	138	143	Right-handed alpha
Helix 8	AA8	A	166	181	Right-handed alpha
Helix 9	AA9	A	184	188	Right-handed 310
Helix 10	AB1	A	200	206	Right-handed alpha
Helix 11	AB2	A	215	234	Right-handed alpha
Helix 12	AB3	A	254	260	Right-handed alpha
Helix 13	AB4	A	260	269	Right-handed alpha
Helix 14	AB5	A	270	272	Right-handed 310
Helix 15	AB6	A	294	313	Right-handed alpha
Helix 16	AB7	A	327	331	Right-handed 310
Helix 17	AB8	A	336	356	Right-handed alpha
Helix 18	AB9	A	357	359	Right-handed 310
Helix 19	AC1	A	372	376	Right-handed 310
Helix 20	AC2	A	407	414	Right-handed alpha
Helix 21	AC3	A	608	612	Right-handed 310
Helix 22	AC4	B	41	46	Right-handed alpha
Helix 23	AC5	B	54	59	Right-handed 310
Helix 24	AC6	B	65	75	Right-handed alpha
Helix 25	AC7	B	82	92	Right-handed alpha
Helix 26	AC8	B	103	121	Right-handed alpha
Helix 27	AC9	B	122	129	Right-handed 310
Helix 28	AD1	B	166	181	Right-handed alpha
Helix 29	AD2	B	184	188	Right-handed 310
Helix 30	AD3	B	200	206	Right-handed alpha
Helix 31	AD4	B	215	234	Right-handed alpha
Helix 32	AD5	B	254	260	Right-handed alpha
Helix 33	AD6	B	260	269	Right-handed alpha
Helix 34	AD7	B	270	272	Right-handed 310
Helix 35	AD8	B	294	313	Right-handed alpha
Helix 36	AD9	B	336	356	Right-handed alpha
Helix 37	AE1	B	357	359	Right-handed 310
Helix 38	AE2	B	407	414	Right-handed alpha
Helix 39	AE3	B	608	612	Right-handed 310

There are 12 sheets in PDB entry 5TA5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	492	first strand
Strand 2	A	469	478	anti-parallel
Strand 3	A	505	511	anti-parallel
Strand 4	A	441	448	anti-parallel
Strand 5	A	431	438	anti-parallel
Strand 6	A	420	426	anti-parallel
Strand 7	A	22	34	anti-parallel
Strand 8	A	520	528	parallel
Strand 9	A	628	639	anti-parallel
Strand 10	A	534	535	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	500	first strand
Strand 2	A	454	461	anti-parallel
Strand 3	A	22	34	parallel
Strand 4	A	520	528	parallel
Strand 5	A	628	639	anti-parallel
Strand 6	A	555	565	anti-parallel
Strand 7	A	599	606	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	77	81	parallel
Strand 3	A	131	137	parallel
Strand 4	A	194	198	parallel
Strand 5	A	239	244	parallel
Strand 6	A	274	285	parallel
Strand 7	A	288	290	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	77	81	parallel
Strand 3	A	131	137	parallel
Strand 4	A	194	198	parallel
Strand 5	A	239	244	parallel
Strand 6	A	274	285	parallel
Strand 7	A	318	325	parallel
Strand 8	A	361	366	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	391	first strand
Strand 2	A	402	404	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	546	first strand
Strand 2	A	616	621	anti-parallel
Strand 3	A	574	577	anti-parallel
Strand 4	A	580	582	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	492	first strand
Strand 2	B	469	478	anti-parallel
Strand 3	B	505	511	anti-parallel
Strand 4	B	441	448	anti-parallel
Strand 5	B	431	438	anti-parallel
Strand 6	B	420	426	anti-parallel
Strand 7	B	22	34	anti-parallel
Strand 8	B	520	528	parallel
Strand 9	B	628	639	anti-parallel
Strand 10	B	534	535	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	500	first strand
Strand 2	B	454	461	anti-parallel
Strand 3	B	22	34	parallel
Strand 4	B	520	528	parallel
Strand 5	B	628	639	anti-parallel
Strand 6	B	555	565	anti-parallel
Strand 7	B	599	607	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	131	137	parallel
Strand 3	B	194	198	parallel
Strand 4	B	239	244	parallel
Strand 5	B	274	285	parallel
Strand 6	B	288	290	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	131	137	parallel
Strand 3	B	194	198	parallel
Strand 4	B	239	244	parallel
Strand 5	B	274	285	parallel
Strand 6	B	318	325	parallel
Strand 7	B	361	366	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	391	first strand
Strand 2	B	402	404	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	546	first strand
Strand 2	B	616	621	anti-parallel
Strand 3	B	574	577	anti-parallel
Strand 4	B	580	582	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TA5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TA5