Analysis of interatomic Contacts of Structural Units in PDB entry:
5TA9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TA9 entry

There are 4 chains in PDB entry 5TA9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 34	LYS 402
B	TYR 34	LYS 402
C	TYR 34	LYS 402
D	TYR 34	LYS 402

There are 15 helices in PDB entry 5TA9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	42	Right-handed alpha
Helix 2	AA2	A	51	59	Right-handed alpha
Helix 3	AA3	A	356	360	Right-handed 310
Helix 4	AA4	A	362	365	Right-handed 310
Helix 5	AA5	B	35	43	Right-handed alpha
Helix 6	AA6	B	51	59	Right-handed alpha
Helix 7	AA7	B	356	360	Right-handed 310
Helix 8	AA8	B	362	365	Right-handed 310
Helix 9	AA9	C	35	42	Right-handed alpha
Helix 10	AB1	C	51	60	Right-handed alpha
Helix 11	AB2	C	356	360	Right-handed 310
Helix 12	AB3	C	363	365	Right-handed 310
Helix 13	AB4	D	35	43	Right-handed alpha
Helix 14	AB5	D	51	60	Right-handed alpha
Helix 15	AB6	D	363	365	Right-handed 310

There are 32 sheets in PDB entry 5TA9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	75	first strand
Strand 2	A	379	387	anti-parallel
Strand 3	A	367	373	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	142	150	parallel
Strand 3	A	131	137	anti-parallel
Strand 4	A	100	109	anti-parallel
Strand 5	A	86	89	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	142	150	parallel
Strand 3	A	131	137	anti-parallel
Strand 4	A	100	109	anti-parallel
Strand 5	A	95	97	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	171	first strand
Strand 2	A	174	182	anti-parallel
Strand 3	A	193	199	anti-parallel
Strand 4	A	207	208	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	232	234	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	251	first strand
Strand 2	A	254	262	anti-parallel
Strand 3	A	275	282	anti-parallel
Strand 4	A	290	291	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	272	273	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	309	first strand
Strand 2	A	312	317	anti-parallel
Strand 3	A	326	330	anti-parallel
Strand 4	A	337	341	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	75	first strand
Strand 2	B	379	387	anti-parallel
Strand 3	B	367	373	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	142	150	parallel
Strand 3	B	131	137	anti-parallel
Strand 4	B	100	109	anti-parallel
Strand 5	B	86	89	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	142	150	parallel
Strand 3	B	131	137	anti-parallel
Strand 4	B	100	109	anti-parallel
Strand 5	B	95	97	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	171	first strand
Strand 2	B	174	182	anti-parallel
Strand 3	B	193	199	anti-parallel
Strand 4	B	207	208	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	232	234	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	251	first strand
Strand 2	B	254	262	anti-parallel
Strand 3	B	276	282	anti-parallel
Strand 4	B	290	291	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	272	273	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	309	first strand
Strand 2	B	312	317	anti-parallel
Strand 3	B	326	330	anti-parallel
Strand 4	B	337	341	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	75	first strand
Strand 2	C	379	387	anti-parallel
Strand 3	C	367	373	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	142	150	parallel
Strand 3	C	131	137	anti-parallel
Strand 4	C	100	109	anti-parallel
Strand 5	C	86	89	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	142	150	parallel
Strand 3	C	131	137	anti-parallel
Strand 4	C	100	109	anti-parallel
Strand 5	C	95	97	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	171	first strand
Strand 2	C	174	182	anti-parallel
Strand 3	C	192	199	anti-parallel
Strand 4	C	207	208	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	232	234	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	251	first strand
Strand 2	C	254	262	anti-parallel
Strand 3	C	275	282	anti-parallel
Strand 4	C	290	291	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	269	first strand
Strand 2	C	272	273	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	309	first strand
Strand 2	C	312	317	anti-parallel
Strand 3	C	326	330	anti-parallel
Strand 4	C	337	341	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	75	first strand
Strand 2	D	379	388	anti-parallel
Strand 3	D	367	373	anti-parallel
Strand 4	D	350	351	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	142	150	parallel
Strand 3	D	131	137	anti-parallel
Strand 4	D	100	109	anti-parallel
Strand 5	D	86	89	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	142	150	parallel
Strand 3	D	131	137	anti-parallel
Strand 4	D	100	109	anti-parallel
Strand 5	D	95	97	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	171	first strand
Strand 2	D	174	182	anti-parallel
Strand 3	D	193	199	anti-parallel
Strand 4	D	207	208	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	222	first strand
Strand 2	D	232	234	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	251	first strand
Strand 2	D	254	262	anti-parallel
Strand 3	D	276	282	anti-parallel
Strand 4	D	290	291	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	269	first strand
Strand 2	D	272	273	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	308	first strand
Strand 2	D	313	317	anti-parallel
Strand 3	D	326	330	anti-parallel
Strand 4	D	337	341	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TA9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TA9