Analysis of interatomic Contacts of Structural Units in PDB entry:
5TB5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TB5 entry

There are 4 chains in PDB entry 5TB5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1LYS 184
B
 MET 1VAL 150
C
 THR 2LYS 184
D
 ASP 5VAL 150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5TB5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 26Right-handed alpha
Helix 2
AA2
A
64 75Right-handed alpha
Helix 3
AA3
A
86 92Right-handed alpha
Helix 4
AA4
A
92 105Right-handed alpha
Helix 5
AA5
A
126 138Right-handed alpha
Helix 6
AA6
A
151 171Right-handed alpha
Helix 7
AA7
B
2 14Right-handed alpha
Helix 8
AA8
B
52 56Right-handed 310
Helix 9
AA9
B
113 117Right-handed 310
Helix 10
AB1
B
119 124Right-handed alpha
Helix 11
AB2
C
15 26Right-handed alpha
Helix 12
AB3
C
60 63Right-handed 310
Helix 13
AB4
C
64 75Right-handed alpha
Helix 14
AB5
C
86 92Right-handed alpha
Helix 15
AB6
C
92 105Right-handed alpha
Helix 16
AB7
C
126 138Right-handed alpha
Helix 17
AB8
C
151 171Right-handed alpha
Helix 18
AB9
D
6 14Right-handed alpha
Helix 19
AC1
D
52 56Right-handed 310
Helix 20
AC2
D
113 117Right-handed 310
Helix 21
AC3
D
119 124Right-handed alpha
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There are 6 sheets in PDB entry 5TB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 46first strand
Strand 2
A
49 57anti-parallel
Strand 3
A
2 9parallel
Strand 4
A
77 83parallel
Strand 5
A
111 116parallel
Strand 6
A
141 143parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
15 24anti-parallel
Strand 3
B
58 67anti-parallel
Strand 4
B
101 110anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 50first strand
Strand 2
B
138 150parallel
Strand 3
B
127 135anti-parallel
Strand 4
B
71 82anti-parallel
Strand 5
B
85 97anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 45first strand
Strand 2
C
50 57anti-parallel
Strand 3
C
3 9parallel
Strand 4
C
77 83parallel
Strand 5
C
111 116parallel
Strand 6
C
141 143parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 33first strand
Strand 2
D
15 24anti-parallel
Strand 3
D
58 67anti-parallel
Strand 4
D
101 110anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 50first strand
Strand 2
D
138 150parallel
Strand 3
D
127 135anti-parallel
Strand 4
D
71 82anti-parallel
Strand 5
D
85 97anti-parallel
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