Analysis of interatomic Contacts of Structural Units in PDB entry:
5TB7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TB7 entry

There are 3 chains in PDB entry 5TB7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 52	TYR 363
B	GLU 53	TYR 363
C	GLU 53	TYR 363

There are 18 helices in PDB entry 5TB7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	143	148	Right-handed 310
Helix 2	AA2	A	179	186	Right-handed alpha
Helix 3	AA3	A	229	236	Right-handed alpha
Helix 4	AA4	A	251	255	Right-handed 310
Helix 5	AA5	A	292	294	Right-handed 310
Helix 6	AA6	A	330	337	Right-handed alpha
Helix 7	AA7	B	143	148	Right-handed 310
Helix 8	AA8	B	179	186	Right-handed alpha
Helix 9	AA9	B	229	235	Right-handed alpha
Helix 10	AB1	B	251	255	Right-handed 310
Helix 11	AB2	B	292	294	Right-handed 310
Helix 12	AB3	B	330	337	Right-handed alpha
Helix 13	AB4	C	143	148	Right-handed 310
Helix 14	AB5	C	179	186	Right-handed alpha
Helix 15	AB6	C	229	236	Right-handed alpha
Helix 16	AB7	C	251	255	Right-handed 310
Helix 17	AB8	C	292	294	Right-handed 310
Helix 18	AB9	C	331	337	Right-handed alpha

There are 15 sheets in PDB entry 5TB7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	78	93	parallel
Strand 3	A	96	103	anti-parallel
Strand 4	A	224	226	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	78	93	parallel
Strand 3	A	119	126	parallel
Strand 4	A	157	164	anti-parallel
Strand 5	B	359	362	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	189	195	parallel
Strand 3	A	169	174	anti-parallel
Strand 4	A	137	138	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	243	first strand
Strand 2	A	205	214	anti-parallel
Strand 3	A	263	272	parallel
Strand 4	A	310	317	anti-parallel
Strand 5	A	288	290	anti-parallel
Strand 6	A	297	298	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	259	first strand
Strand 2	A	340	346	parallel
Strand 3	A	322	328	anti-parallel
Strand 4	A	277	282	anti-parallel
Strand 5	A	304	306	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	362	first strand
Strand 2	C	157	164	anti-parallel
Strand 3	C	119	126	anti-parallel
Strand 4	C	78	93	parallel
Strand 5	C	56	58	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	362	first strand
Strand 2	C	157	164	anti-parallel
Strand 3	C	119	126	anti-parallel
Strand 4	C	78	93	parallel
Strand 5	C	96	103	anti-parallel
Strand 6	C	224	225	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	78	93	parallel
Strand 3	B	96	103	anti-parallel
Strand 4	B	224	226	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	78	93	parallel
Strand 3	B	119	126	parallel
Strand 4	B	157	164	anti-parallel
Strand 5	C	359	362	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	115	first strand
Strand 2	B	189	195	parallel
Strand 3	B	169	174	anti-parallel
Strand 4	B	137	138	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	205	214	anti-parallel
Strand 3	B	263	272	parallel
Strand 4	B	310	317	anti-parallel
Strand 5	B	288	290	anti-parallel
Strand 6	B	297	298	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	259	first strand
Strand 2	B	340	346	parallel
Strand 3	B	322	328	anti-parallel
Strand 4	B	277	282	anti-parallel
Strand 5	B	304	306	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	115	first strand
Strand 2	C	189	195	parallel
Strand 3	C	169	174	anti-parallel
Strand 4	C	137	138	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	243	first strand
Strand 2	C	205	214	anti-parallel
Strand 3	C	263	272	parallel
Strand 4	C	310	317	anti-parallel
Strand 5	C	288	290	anti-parallel
Strand 6	C	297	298	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	259	first strand
Strand 2	C	340	346	parallel
Strand 3	C	322	328	anti-parallel
Strand 4	C	277	282	anti-parallel
Strand 5	C	304	306	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TB7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TB7