Analysis of interatomic Contacts of Structural Units in PDB entry:
5TC1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TC1 entry

There are 10 chains in PDB entry 5TC1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	TYR 129
B	ALA 1	TYR 129
C	ALA 1	TYR 129
D	ALA 1	TYR 129
E	ALA 1	TYR 129
F	ALA 1	TYR 129
G	ALA 1	TYR 129
H	ALA 1	TYR 129
M	MET 1	ARG 393
R	G 102	C 3564

There are 38 helices in PDB entry 5TC1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	29	Right-handed 310
Helix 2	AA2	A	97	111	Right-handed alpha
Helix 3	AA3	A	116	123	Right-handed alpha
Helix 4	AA4	B	25	29	Right-handed 310
Helix 5	AA5	B	97	112	Right-handed alpha
Helix 6	AA6	B	118	123	Right-handed alpha
Helix 7	AA7	C	25	29	Right-handed 310
Helix 8	AA8	C	37	41	Right-handed 310
Helix 9	AA9	C	97	112	Right-handed alpha
Helix 10	AB1	C	118	123	Right-handed alpha
Helix 11	AB2	D	25	27	Right-handed 310
Helix 12	AB3	D	97	112	Right-handed alpha
Helix 13	AB4	D	116	124	Right-handed alpha
Helix 14	AB5	E	78	81	Right-handed 310
Helix 15	AB6	E	97	112	Right-handed alpha
Helix 16	AB7	E	118	123	Right-handed alpha
Helix 17	AB8	F	25	29	Right-handed 310
Helix 18	AB9	F	97	112	Right-handed alpha
Helix 19	AC1	F	116	124	Right-handed alpha
Helix 20	AC2	G	25	29	Right-handed 310
Helix 21	AC3	G	37	41	Right-handed 310
Helix 22	AC4	G	97	112	Right-handed alpha
Helix 23	AC5	G	116	123	Right-handed alpha
Helix 24	AC6	H	25	29	Right-handed 310
Helix 25	AC7	H	97	110	Right-handed alpha
Helix 26	AC8	H	116	123	Right-handed alpha
Helix 27	AC9	M	98	104	Right-handed 310
Helix 28	AD1	M	117	135	Right-handed alpha
Helix 29	AD2	M	140	145	Right-handed alpha
Helix 30	AD3	M	145	150	Right-handed alpha
Helix 31	AD4	M	152	169	Right-handed alpha
Helix 32	AD5	M	171	176	Right-handed alpha
Helix 33	AD6	M	191	199	Right-handed alpha
Helix 34	AD7	M	199	220	Right-handed alpha
Helix 35	AD8	M	221	224	Right-handed 310
Helix 36	AD9	M	294	300	Right-handed alpha
Helix 37	AE1	M	300	312	Right-handed alpha
Helix 38	AE2	M	379	388	Right-handed alpha

There are 9 sheets in PDB entry 5TC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	10	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	30	34	anti-parallel
Strand 4	A	43	49	anti-parallel
Strand 5	A	55	72	anti-parallel
Strand 6	A	75	93	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	10	first strand
Strand 2	B	18	24	anti-parallel
Strand 3	B	30	33	anti-parallel
Strand 4	B	43	50	anti-parallel
Strand 5	B	55	63	anti-parallel
Strand 6	B	88	93	anti-parallel
Strand 7	D	75	93	anti-parallel
Strand 8	D	55	72	anti-parallel
Strand 9	D	43	49	anti-parallel
Strand 10	D	29	33	anti-parallel
Strand 11	D	18	24	anti-parallel
Strand 12	D	7	10	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	10	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	31	34	anti-parallel
Strand 4	C	43	50	anti-parallel
Strand 5	C	55	72	anti-parallel
Strand 6	C	75	93	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	10	first strand
Strand 2	E	18	26	anti-parallel
Strand 3	E	29	34	anti-parallel
Strand 4	E	43	50	anti-parallel
Strand 5	E	55	65	anti-parallel
Strand 6	E	83	93	anti-parallel
Strand 7	F	75	88	anti-parallel
Strand 8	F	55	72	anti-parallel
Strand 9	F	43	49	anti-parallel
Strand 10	F	30	34	anti-parallel
Strand 11	F	18	24	anti-parallel
Strand 12	F	7	10	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	10	first strand
Strand 2	E	18	26	anti-parallel
Strand 3	E	29	34	anti-parallel
Strand 4	E	43	50	anti-parallel
Strand 5	E	55	65	anti-parallel
Strand 6	E	83	93	anti-parallel
Strand 7	F	91	93	anti-parallel
Strand 8	F	55	72	anti-parallel
Strand 9	F	43	49	anti-parallel
Strand 10	F	30	34	anti-parallel
Strand 11	F	18	24	anti-parallel
Strand 12	F	7	10	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	10	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	30	34	anti-parallel
Strand 4	G	43	52	anti-parallel
Strand 5	G	55	63	anti-parallel
Strand 6	G	86	92	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	10	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	30	34	anti-parallel
Strand 4	H	43	49	anti-parallel
Strand 5	H	55	71	anti-parallel
Strand 6	H	76	93	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	38	39	first strand
Strand 2	M	65	69	anti-parallel
Strand 3	M	350	359	anti-parallel
Strand 4	M	314	332	anti-parallel
Strand 5	M	253	267	anti-parallel
Strand 6	M	227	240	anti-parallel
Strand 7	M	138	139	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	44	45	first strand
Strand 2	M	60	62	anti-parallel
Strand 3	M	350	359	anti-parallel
Strand 4	M	314	332	anti-parallel
Strand 5	M	369	371	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TC1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TC1