Analysis of interatomic Contacts of Structural Units in PDB entry:
5TC3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TC3 entry

There are 2 chains in PDB entry 5TC3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ASP 522
B	THR 2	GLN 201

There are 45 helices in PDB entry 5TC3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	7	Right-handed 310
Helix 2	AA2	A	8	14	Right-handed alpha
Helix 3	AA3	A	23	29	Right-handed alpha
Helix 4	AA4	A	37	39	Right-handed 310
Helix 5	AA5	A	51	55	Right-handed 310
Helix 6	AA6	A	81	91	Right-handed alpha
Helix 7	AA7	A	102	115	Right-handed alpha
Helix 8	AA8	A	132	144	Right-handed alpha
Helix 9	AA9	A	165	170	Right-handed alpha
Helix 10	AB1	A	178	183	Right-handed alpha
Helix 11	AB2	A	195	207	Right-handed alpha
Helix 12	AB3	A	226	235	Right-handed alpha
Helix 13	AB4	A	257	269	Right-handed alpha
Helix 14	AB5	A	283	297	Right-handed alpha
Helix 15	AB6	A	309	319	Right-handed alpha
Helix 16	AB7	A	335	341	Right-handed alpha
Helix 17	AB8	A	345	358	Right-handed alpha
Helix 18	AB9	A	359	361	Right-handed 310
Helix 19	AC1	A	372	382	Right-handed alpha
Helix 20	AC2	A	459	479	Right-handed alpha
Helix 21	AC3	A	482	492	Right-handed alpha
Helix 22	AC4	A	501	509	Right-handed alpha
Helix 23	AC5	B	5	7	Right-handed 310
Helix 24	AC6	B	8	14	Right-handed alpha
Helix 25	AC7	B	23	29	Right-handed alpha
Helix 26	AC8	B	29	34	Right-handed alpha
Helix 27	AC9	B	37	39	Right-handed 310
Helix 28	AD1	B	51	55	Right-handed 310
Helix 29	AD2	B	81	91	Right-handed alpha
Helix 30	AD3	B	102	117	Right-handed alpha
Helix 31	AD4	B	132	144	Right-handed alpha
Helix 32	AD5	B	165	170	Right-handed alpha
Helix 33	AD6	B	178	183	Right-handed alpha
Helix 34	AD7	B	195	207	Right-handed alpha
Helix 35	AD8	B	226	235	Right-handed alpha
Helix 36	AD9	B	257	269	Right-handed alpha
Helix 37	AE1	B	283	297	Right-handed alpha
Helix 38	AE2	B	309	319	Right-handed alpha
Helix 39	AE3	B	335	341	Right-handed alpha
Helix 40	AE4	B	345	358	Right-handed alpha
Helix 41	AE5	B	359	361	Right-handed 310
Helix 42	AE6	B	372	382	Right-handed alpha
Helix 43	AE7	B	459	479	Right-handed alpha
Helix 44	AE8	B	482	492	Right-handed alpha
Helix 45	AE9	B	501	509	Right-handed alpha

There are 12 sheets in PDB entry 5TC3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	497	499	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	66	67	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	94	97	parallel
Strand 3	A	250	253	parallel
Strand 4	A	273	276	parallel
Strand 5	A	301	307	parallel
Strand 6	A	323	326	parallel
Strand 7	A	364	367	parallel
Strand 8	A	386	389	parallel
Strand 9	A	71	73	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	220	225	anti-parallel
Strand 3	A	210	214	anti-parallel
Strand 4	A	190	191	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	151	first strand
Strand 2	A	160	164	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	414	first strand
Strand 2	A	452	455	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	497	499	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	66	67	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	73	first strand
Strand 2	B	94	97	parallel
Strand 3	B	250	253	parallel
Strand 4	B	273	276	parallel
Strand 5	B	301	307	parallel
Strand 6	B	323	326	parallel
Strand 7	B	364	367	parallel
Strand 8	B	386	389	parallel
Strand 9	B	71	73	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	160	164	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	191	first strand
Strand 2	B	210	214	parallel
Strand 3	B	220	225	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	414	first strand
Strand 2	B	452	455	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TC3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TC3