Analysis of interatomic Contacts of Structural Units in PDB entry:
5TC5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TC5 entry

There are 3 chains in PDB entry 5TC5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -8PRO 281
B
 ALA 9LEU 280
C
 ALA 9LEU 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5TC5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 72Right-handed 310
Helix 2
AA2
A
73 85Right-handed alpha
Helix 3
AA3
A
145 160Right-handed alpha
Helix 4
AA4
A
179 189Right-handed alpha
Helix 5
AA5
A
197 208Right-handed alpha
Helix 6
AA6
A
232 260Right-handed alpha
Helix 7
AA7
A
263 276Right-handed alpha
Helix 8
AA8
B
68 72Right-handed 310
Helix 9
AA9
B
73 85Right-handed alpha
Helix 10
AB1
B
145 159Right-handed alpha
Helix 11
AB2
B
179 189Right-handed alpha
Helix 12
AB3
B
197 208Right-handed alpha
Helix 13
AB4
B
232 260Right-handed alpha
Helix 14
AB5
B
263 276Right-handed alpha
Helix 15
AB6
C
68 72Right-handed 310
Helix 16
AB7
C
73 85Right-handed alpha
Helix 17
AB8
C
145 160Right-handed alpha
Helix 18
AB9
C
179 189Right-handed alpha
Helix 19
AC1
C
197 208Right-handed alpha
Helix 20
AC2
C
232 261Right-handed alpha
Helix 21
AC3
C
263 276Right-handed alpha
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There are 9 sheets in PDB entry 5TC5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
45 50anti-parallel
Strand 3
A
53 58anti-parallel
Strand 4
A
11 15parallel
Strand 5
A
88 97parallel
Strand 6
A
193 195anti-parallel
Strand 7
A
168 172parallel
Strand 8
A
112 116parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
45 50anti-parallel
Strand 3
A
53 58anti-parallel
Strand 4
A
11 15parallel
Strand 5
A
88 97parallel
Strand 6
A
211 220parallel
Strand 7
A
107 108anti-parallel
Strand 8
A
163 164parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
278 279anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 32first strand
Strand 2
B
45 50anti-parallel
Strand 3
B
53 58anti-parallel
Strand 4
B
12 15parallel
Strand 5
B
88 97parallel
Strand 6
B
193 195anti-parallel
Strand 7
B
168 172parallel
Strand 8
B
112 116parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 32first strand
Strand 2
B
45 50anti-parallel
Strand 3
B
53 58anti-parallel
Strand 4
B
12 15parallel
Strand 5
B
88 97parallel
Strand 6
B
211 220parallel
Strand 7
B
107 108anti-parallel
Strand 8
B
163 164parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
278 279anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 32first strand
Strand 2
C
45 50anti-parallel
Strand 3
C
53 58anti-parallel
Strand 4
C
11 15parallel
Strand 5
C
88 97parallel
Strand 6
C
193 195anti-parallel
Strand 7
C
168 172parallel
Strand 8
C
112 116parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 32first strand
Strand 2
C
45 50anti-parallel
Strand 3
C
53 58anti-parallel
Strand 4
C
11 15parallel
Strand 5
C
88 97parallel
Strand 6
C
211 220parallel
Strand 7
C
107 108anti-parallel
Strand 8
C
163 164parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 136first strand
Strand 2
C
278 279anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il