Analysis of interatomic Contacts of Structural Units in PDB entry:
5TCB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TCB entry

There is 1 chain in PDB entry 5TCB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 48GLU 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5TCB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 66Right-handed alpha
Helix 2
AA2
A
75 78Right-handed 310
Helix 3
AA3
A
79 89Right-handed alpha
Helix 4
AA4
A
105 112Right-handed alpha
Helix 5
AA5
A
114 118Right-handed 310
Helix 6
AA6
A
135 152Right-handed alpha
Helix 7
AA7
A
163 168Right-handed 310
Helix 8
AA8
A
169 171Right-handed 310
Helix 9
AA9
A
172 191Right-handed alpha
Helix 10
AB1
A
204 208Right-handed 310
Helix 11
AB2
A
235 252Right-handed alpha
Helix 12
AB3
A
263 265Right-handed 310
Helix 13
AB4
A
266 280Right-handed alpha
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There are 3 sheets in PDB entry 5TCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
70 73parallel
Strand 3
A
92 98parallel
Strand 4
A
156 160parallel
Strand 5
A
195 199parallel
Strand 6
A
212 217parallel
Strand 7
A
256 261parallel
Strand 8
A
283 287parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
128 130anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
230 233anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il