Analysis of interatomic Contacts of Structural Units in PDB entry:
5TCD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TCD entry

There is 1 chain in PDB entry 5TCD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 30SER 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5TCD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 61Right-handed alpha
Helix 2
AA2
A
74 85Right-handed alpha
Helix 3
AA3
A
87 92Right-handed alpha
Helix 4
AA4
A
108 113Right-handed alpha
Helix 5
AA5
A
115 120Right-handed alpha
Helix 6
AA6
A
125 132Right-handed alpha
Helix 7
AA7
A
168 186Right-handed alpha
Helix 8
AA8
A
198 206Right-handed alpha
Helix 9
AA9
A
209 233Right-handed alpha
Helix 10
AB1
A
263 265Right-handed 310
Helix 11
AB2
A
269 271Right-handed 310
Helix 12
AB3
A
292 301Right-handed alpha
Helix 13
AB4
A
313 315Right-handed 310
Helix 14
AB5
A
316 320Right-handed 310
Helix 15
AB6
A
359 363Right-handed 310
Helix 16
AB7
A
386 396Right-handed alpha
Helix 17
AB8
A
405 413Right-handed 310
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There are 6 sheets in PDB entry 5TCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
137 140parallel
Strand 3
A
190 195parallel
Strand 4
A
32 38parallel
Strand 5
A
239 244parallel
Strand 6
A
366 369anti-parallel
Strand 7
A
62 64anti-parallel
Strand 8
A
377 379parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
382 383parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
105 107anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 251first strand
Strand 2
A
351 352anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
340 341parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 277first strand
Strand 2
A
283 288anti-parallel
Strand 3
A
330 334anti-parallel
Strand 4
A
307 311anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il