Analysis of interatomic Contacts of Structural Units in PDB entry:
5TCF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TCF entry

There are 7 chains in PDB entry 5TCF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 8	GLY 267
B	ILE 5	HIS 100
B	ILE 102	ASN 409
G	ALA 9	LEU 266
H	ALA 4	HIS 100
H	ILE 102	GLY 408
E	ALA 9	MET 45

There are133 helices in PDB entry 5TCF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	37	52	Right-handed alpha
Helix 3	AA3	A	69	82	Right-handed alpha
Helix 4	AA4	A	85	99	Right-handed alpha
Helix 5	AA5	A	108	116	Right-handed alpha
Helix 6	AA6	A	116	127	Right-handed alpha
Helix 7	AA7	A	138	141	Right-handed 310
Helix 8	AA8	A	142	152	Right-handed alpha
Helix 9	AA9	A	165	176	Right-handed alpha
Helix 10	AB1	A	197	210	Right-handed alpha
Helix 11	AB2	A	222	231	Right-handed alpha
Helix 12	AB3	A	239	249	Right-handed alpha
Helix 13	AB4	A	249	265	Right-handed alpha
Helix 14	AB5	B	31	33	Right-handed 310
Helix 15	AB6	B	34	49	Right-handed alpha
Helix 16	AB7	B	51	65	Right-handed alpha
Helix 17	AB8	B	76	83	Right-handed 310
Helix 18	AB9	B	92	95	Right-handed 310
Helix 19	AC1	B	100	115	Right-handed alpha
Helix 20	AC2	B	127	141	Right-handed alpha
Helix 21	AC3	B	150	156	Right-handed alpha
Helix 22	AC4	B	156	166	Right-handed alpha
Helix 23	AC5	B	179	194	Right-handed alpha
Helix 24	AC6	B	210	235	Right-handed alpha
Helix 25	AC7	B	248	256	Right-handed alpha
Helix 26	AC8	B	257	259	Right-handed 310
Helix 27	AC9	B	275	279	Right-handed 310
Helix 28	AD1	B	283	288	Right-handed alpha
Helix 29	AD2	B	324	333	Right-handed alpha
Helix 30	AD3	B	343	358	Right-handed alpha
Helix 31	AD4	B	362	380	Right-handed alpha
Helix 32	AD5	B	393	395	Right-handed 310
Helix 33	AD6	B	396	404	Right-handed alpha
Helix 34	AD7	G	12	22	Right-handed alpha
Helix 35	AD8	G	37	51	Right-handed alpha
Helix 36	AD9	G	69	82	Right-handed alpha
Helix 37	AE1	G	85	99	Right-handed alpha
Helix 38	AE2	G	108	116	Right-handed alpha
Helix 39	AE3	G	116	127	Right-handed alpha
Helix 40	AE4	G	138	141	Right-handed 310
Helix 41	AE5	G	142	152	Right-handed alpha
Helix 42	AE6	G	165	176	Right-handed alpha
Helix 43	AE7	G	197	208	Right-handed alpha
Helix 44	AE8	G	222	231	Right-handed alpha
Helix 45	AE9	G	239	249	Right-handed alpha
Helix 46	AF1	G	249	265	Right-handed alpha
Helix 47	AF2	H	31	33	Right-handed 310
Helix 48	AF3	H	34	50	Right-handed alpha
Helix 49	AF4	H	51	65	Right-handed alpha
Helix 50	AF5	H	76	83	Right-handed 310
Helix 51	AF6	H	92	99	Right-handed 310
Helix 52	AF7	H	100	115	Right-handed alpha
Helix 53	AF8	H	127	141	Right-handed alpha
Helix 54	AF9	H	150	155	Right-handed alpha
Helix 55	AG1	H	156	166	Right-handed alpha
Helix 56	AG2	H	179	194	Right-handed alpha
Helix 57	AG3	H	210	235	Right-handed alpha
Helix 58	AG4	H	248	256	Right-handed alpha
Helix 59	AG5	H	257	259	Right-handed 310
Helix 60	AG6	H	283	288	Right-handed alpha
Helix 61	AG7	H	324	333	Right-handed alpha
Helix 62	AG8	H	342	358	Right-handed alpha
Helix 63	AG9	H	362	380	Right-handed alpha
Helix 64	AH1	H	393	395	Right-handed 310
Helix 65	AH2	H	396	404	Right-handed alpha
Helix 66	AH3	E	12	21	Right-handed alpha
Helix 67	AH4	E	37	51	Right-handed alpha
Helix 68	AH5	E	69	82	Right-handed alpha
Helix 69	AH6	E	85	99	Right-handed alpha
Helix 70	AH7	E	108	116	Right-handed alpha
Helix 71	AH8	E	116	127	Right-handed alpha
Helix 72	AH9	E	138	141	Right-handed 310
Helix 73	AI1	E	142	153	Right-handed alpha
Helix 74	AI2	E	165	176	Right-handed alpha
Helix 75	AI3	E	198	208	Right-handed alpha
Helix 76	AI4	E	222	231	Right-handed alpha
Helix 77	AI5	E	239	249	Right-handed alpha
Helix 78	AI6	E	249	264	Right-handed alpha
Helix 79	AI7	F	31	33	Right-handed 310
Helix 80	AI8	F	34	49	Right-handed alpha
Helix 81	AI9	F	51	65	Right-handed alpha
Helix 82	AJ1	F	78	83	Right-handed 310
Helix 83	AJ2	F	92	95	Right-handed 310
Helix 84	AJ3	F	100	115	Right-handed alpha
Helix 85	AJ4	F	127	141	Right-handed alpha
Helix 86	AJ5	F	150	155	Right-handed alpha
Helix 87	AJ6	F	156	166	Right-handed alpha
Helix 88	AJ7	F	179	194	Right-handed alpha
Helix 89	AJ8	F	210	220	Right-handed alpha
Helix 90	AJ9	F	220	235	Right-handed alpha
Helix 91	AK1	F	248	256	Right-handed alpha
Helix 92	AK2	F	257	259	Right-handed 310
Helix 93	AK3	F	275	279	Right-handed 310
Helix 94	AK4	F	283	288	Right-handed alpha
Helix 95	AK5	F	324	333	Right-handed alpha
Helix 96	AK6	F	343	358	Right-handed alpha
Helix 97	AK7	F	362	380	Right-handed alpha
Helix 98	AK8	F	393	395	Right-handed 310
Helix 99	AK9	F	396	404	Right-handed alpha
Helix 100	AL1	C	12	22	Right-handed alpha
Helix 101	AL2	C	37	52	Right-handed alpha
Helix 102	AL3	C	69	82	Right-handed alpha
Helix 103	AL4	C	85	99	Right-handed alpha
Helix 104	AL5	C	108	116	Right-handed alpha
Helix 105	AL6	C	116	127	Right-handed alpha
Helix 106	AL7	C	138	141	Right-handed 310
Helix 107	AL8	C	142	152	Right-handed alpha
Helix 108	AL9	C	165	176	Right-handed alpha
Helix 109	AM1	C	197	208	Right-handed alpha
Helix 110	AM2	C	222	231	Right-handed alpha
Helix 111	AM3	C	239	249	Right-handed alpha
Helix 112	AM4	C	249	264	Right-handed alpha
Helix 113	AM5	D	31	33	Right-handed 310
Helix 114	AM6	D	34	49	Right-handed alpha
Helix 115	AM7	D	51	65	Right-handed alpha
Helix 116	AM8	D	78	82	Right-handed 310
Helix 117	AM9	D	93	95	Right-handed 310
Helix 118	AN1	D	100	116	Right-handed alpha
Helix 119	AN2	D	127	141	Right-handed alpha
Helix 120	AN3	D	150	155	Right-handed alpha
Helix 121	AN4	D	156	166	Right-handed alpha
Helix 122	AN5	D	179	194	Right-handed alpha
Helix 123	AN6	D	210	235	Right-handed alpha
Helix 124	AN7	D	248	256	Right-handed alpha
Helix 125	AN8	D	257	259	Right-handed 310
Helix 126	AN9	D	275	279	Right-handed 310
Helix 127	AO1	D	283	288	Right-handed alpha
Helix 128	AO2	D	315	319	Right-handed 310
Helix 129	AO3	D	324	333	Right-handed alpha
Helix 130	AO4	D	342	358	Right-handed alpha
Helix 131	AO5	D	362	380	Right-handed alpha
Helix 132	AO6	D	393	395	Right-handed 310
Helix 133	AO7	D	396	404	Right-handed alpha

There are 18 sheets in PDB entry 5TCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	157	first strand
Strand 2	A	131	133	parallel
Strand 3	A	103	106	parallel
Strand 4	A	55	59	parallel
Strand 5	A	26	32	parallel
Strand 6	A	235	238	parallel
Strand 7	A	214	217	parallel
Strand 8	A	180	183	parallel
Strand 9	A	159	160	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	25	26	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	74	first strand
Strand 2	B	86	90	anti-parallel
Strand 3	B	384	388	parallel
Strand 4	B	240	244	parallel
Strand 5	B	265	273	parallel
Strand 6	B	336	342	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	173	first strand
Strand 2	B	143	149	parallel
Strand 3	B	119	123	parallel
Strand 4	B	198	200	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	293	first strand
Strand 2	B	296	300	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	157	first strand
Strand 2	G	131	133	parallel
Strand 3	G	103	106	parallel
Strand 4	G	55	59	parallel
Strand 5	G	26	32	parallel
Strand 6	G	235	238	parallel
Strand 7	G	214	217	parallel
Strand 8	G	180	183	parallel
Strand 9	G	159	160	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	19	first strand
Strand 2	H	25	29	anti-parallel
Strand 3	H	295	300	anti-parallel
Strand 4	H	289	293	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	72	74	first strand
Strand 2	H	86	90	anti-parallel
Strand 3	H	384	388	parallel
Strand 4	H	240	244	parallel
Strand 5	H	265	271	parallel
Strand 6	H	337	341	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	173	first strand
Strand 2	H	143	149	parallel
Strand 3	H	119	123	parallel
Strand 4	H	198	200	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	157	first strand
Strand 2	E	131	133	parallel
Strand 3	E	103	106	parallel
Strand 4	E	55	59	parallel
Strand 5	E	26	32	parallel
Strand 6	E	235	238	parallel
Strand 7	E	214	217	parallel
Strand 8	E	180	182	parallel
Strand 9	E	159	160	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	19	first strand
Strand 2	F	25	26	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	74	first strand
Strand 2	F	86	90	anti-parallel
Strand 3	F	384	388	parallel
Strand 4	F	240	244	parallel
Strand 5	F	265	273	parallel
Strand 6	F	336	342	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	173	first strand
Strand 2	F	143	149	parallel
Strand 3	F	119	124	parallel
Strand 4	F	198	200	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	289	293	first strand
Strand 2	F	296	300	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	131	133	parallel
Strand 3	C	103	106	parallel
Strand 4	C	55	59	parallel
Strand 5	C	26	32	parallel
Strand 6	C	235	238	parallel
Strand 7	C	214	217	parallel
Strand 8	C	180	183	parallel
Strand 9	C	159	160	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	25	29	anti-parallel
Strand 3	D	295	300	anti-parallel
Strand 4	D	289	293	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	74	first strand
Strand 2	D	86	91	anti-parallel
Strand 3	D	384	389	parallel
Strand 4	D	240	244	parallel
Strand 5	D	265	271	parallel
Strand 6	D	337	341	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	173	first strand
Strand 2	D	143	149	parallel
Strand 3	D	119	124	parallel
Strand 4	D	198	200	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TCF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TCF