Analysis of interatomic Contacts of Structural Units in PDB entry:
5TCS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TCS entry

There are 4 chains in PDB entry 5TCS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 115GLU 682
B
ILE -13GLN 451
C
LYS 4LYS 213
D
ALA 2HIS 31
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 5TCS. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
121 139Right-handed alpha
Helix 2
AA2
A
140 145Right-handed alpha
Helix 3
AA3
A
158 174Right-handed alpha
Helix 4
AA4
A
183 195Right-handed alpha
Helix 5
AA5
A
198 202Right-handed 310
Helix 6
AA6
A
203 208Right-handed 310
Helix 7
AA7
A
214 255Right-handed alpha
Helix 8
AA8
A
266 293Right-handed alpha
Helix 9
AA9
A
297 680Right-handed alpha
Helix 10
AB1
B
-10 -5Right-handed alpha
Helix 11
AB2
B
12 23Right-handed alpha
Helix 12
AB3
B
39 53Right-handed alpha
Helix 13
AB4
B
56 65Right-handed alpha
Helix 14
AB5
B
78 101Right-handed alpha
Helix 15
AB6
B
108 113Right-handed alpha
Helix 16
AB7
B
115 448Right-handed alpha
Helix 17
AB8
C
10 21Right-handed alpha
Helix 18
AB9
C
23 169Right-handed alpha
Helix 19
AC1
C
199 210Right-handed alpha
Helix 20
AC2
D
3 5Right-handed 310
Helix 21
AC3
D
6 25Right-handed alpha
Helix 22
AC4
D
30 146Right-handed alpha
Helix 23
AC5
D
189 202Right-handed alpha
Helix 24
AC6
D
205 220Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5TCS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
170 173first strand
Strand 2
C
178 181anti-parallel
Strand 3
C
190 193anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
147 154first strand
Strand 2
D
157 163anti-parallel
Strand 3
D
169 173anti-parallel
Strand 4
D
181 184anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il