Analysis of interatomic Contacts of Structural Units in PDB entry:
5TCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TCY entry

There are 3 chains in PDB entry 5TCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22LYS 310
B
 PRO 21VAL 309
C
 MET 23LYS 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5TCY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 67Right-handed alpha
Helix 2
AA2
A
69 71Right-handed 310
Helix 3
AA3
A
77 81Right-handed 310
Helix 4
AA4
A
82 89Right-handed 310
Helix 5
AA5
A
101 109Right-handed alpha
Helix 6
AA6
A
116 121Right-handed 310
Helix 7
AA7
A
122 130Right-handed alpha
Helix 8
AA8
A
141 157Right-handed alpha
Helix 9
AA9
A
159 179Right-handed alpha
Helix 10
AB1
A
207 212Right-handed alpha
Helix 11
AB2
A
232 240Right-handed alpha
Helix 12
AB3
A
249 254Right-handed alpha
Helix 13
AB4
A
258 263Right-handed alpha
Helix 14
AB5
A
265 270Right-handed alpha
Helix 15
AB6
A
271 276Right-handed alpha
Helix 16
AB7
A
283 288Right-handed alpha
Helix 17
AB8
A
296 309Right-handed alpha
Helix 18
AB9
B
57 67Right-handed alpha
Helix 19
AC1
B
69 71Right-handed 310
Helix 20
AC2
B
77 81Right-handed 310
Helix 21
AC3
B
82 89Right-handed 310
Helix 22
AC4
B
101 108Right-handed alpha
Helix 23
AC5
B
116 121Right-handed 310
Helix 24
AC6
B
122 130Right-handed alpha
Helix 25
AC7
B
141 156Right-handed alpha
Helix 26
AC8
B
159 179Right-handed alpha
Helix 27
AC9
B
207 212Right-handed alpha
Helix 28
AD1
B
232 240Right-handed alpha
Helix 29
AD2
B
249 254Right-handed alpha
Helix 30
AD3
B
258 263Right-handed alpha
Helix 31
AD4
B
265 270Right-handed alpha
Helix 32
AD5
B
271 276Right-handed alpha
Helix 33
AD6
B
283 288Right-handed alpha
Helix 34
AD7
B
296 309Right-handed alpha
Helix 35
AD8
C
57 67Right-handed alpha
Helix 36
AD9
C
69 71Right-handed 310
Helix 37
AE1
C
77 81Right-handed 310
Helix 38
AE2
C
82 89Right-handed 310
Helix 39
AE3
C
101 109Right-handed alpha
Helix 40
AE4
C
116 121Right-handed 310
Helix 41
AE5
C
122 130Right-handed alpha
Helix 42
AE6
C
141 157Right-handed alpha
Helix 43
AE7
C
159 180Right-handed alpha
Helix 44
AE8
C
207 212Right-handed alpha
Helix 45
AE9
C
232 240Right-handed alpha
Helix 46
AF1
C
249 254Right-handed alpha
Helix 47
AF2
C
258 263Right-handed alpha
Helix 48
AF3
C
265 270Right-handed alpha
Helix 49
AF4
C
271 276Right-handed alpha
Helix 50
AF5
C
283 288Right-handed alpha
Helix 51
AF6
C
296 310Right-handed alpha
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There are 12 sheets in PDB entry 5TCY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
34 39anti-parallel
Strand 3
A
42 47anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
53 55parallel
Strand 3
A
112 115parallel
Strand 4
A
132 134parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
186 193parallel
Strand 3
A
196 200anti-parallel
Strand 4
A
229 231anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
186 193parallel
Strand 3
A
243 248parallel
Strand 4
A
279 282parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 30first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
42 47anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
53 55parallel
Strand 3
B
112 115parallel
Strand 4
B
132 134parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
186 193parallel
Strand 3
B
196 200anti-parallel
Strand 4
B
229 231anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
186 193parallel
Strand 3
B
243 248parallel
Strand 4
B
279 282parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 30first strand
Strand 2
C
34 38anti-parallel
Strand 3
C
43 47anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 75first strand
Strand 2
C
53 55parallel
Strand 3
C
112 115parallel
Strand 4
C
132 134parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 217first strand
Strand 2
C
186 193parallel
Strand 3
C
196 200anti-parallel
Strand 4
C
229 231anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 217first strand
Strand 2
C
186 193parallel
Strand 3
C
243 248parallel
Strand 4
C
279 282parallel
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