Analysis of interatomic Contacts of Structural Units in PDB entry:
5TD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TD2 entry

There are 2 chains in PDB entry 5TD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 577LEU 861
B
 LEU 577LEU 861
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5TD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
583 585Right-handed 310
Helix 2
AA2
A
639 643Right-handed alpha
Helix 3
AA3
A
679 687Right-handed alpha
Helix 4
AA4
A
696 717Right-handed alpha
Helix 5
AA5
A
763 767Right-handed 310
Helix 6
AA6
A
778 795Right-handed alpha
Helix 7
AA7
A
808 815Right-handed alpha
Helix 8
AA8
A
826 836Right-handed alpha
Helix 9
AA9
A
840 844Right-handed 310
Helix 10
AB1
A
846 860Right-handed alpha
Helix 11
AB2
B
583 585Right-handed 310
Helix 12
AB3
B
628 643Right-handed alpha
Helix 13
AB4
B
678 687Right-handed alpha
Helix 14
AB5
B
696 717Right-handed alpha
Helix 15
AB6
B
725 727Right-handed 310
Helix 16
AB7
B
778 795Right-handed alpha
Helix 17
AB8
B
808 815Right-handed alpha
Helix 18
AB9
B
826 836Right-handed alpha
Helix 19
AC1
B
840 844Right-handed 310
Helix 20
AC2
B
846 860Right-handed alpha
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There are 4 sheets in PDB entry 5TD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 595first strand
Strand 2
A
600 607anti-parallel
Strand 3
A
613 620anti-parallel
Strand 4
A
668 672anti-parallel
Strand 5
A
654 656anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
677 678first strand
Strand 2
A
729 731anti-parallel
Strand 3
A
737 739anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 592first strand
Strand 2
B
601 607anti-parallel
Strand 3
B
613 620anti-parallel
Strand 4
B
668 672anti-parallel
Strand 5
B
654 656anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
729 731first strand
Strand 2
B
737 739anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il