Analysis of interatomic Contacts of Structural Units in PDB entry:
5TD3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TD3 entry

There are 2 chains in PDB entry 5TD3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 11VAL 320
B
 ILE 11VAL 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5TD3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 27Right-handed alpha
Helix 2
AA2
A
38 60Right-handed alpha
Helix 3
AA3
A
62 79Right-handed alpha
Helix 4
AA4
A
81 89Right-handed alpha
Helix 5
AA5
A
90 106Right-handed alpha
Helix 6
AA6
A
217 227Right-handed alpha
Helix 7
AA7
A
269 273Right-handed 310
Helix 8
AA8
A
281 286Right-handed 310
Helix 9
AA9
A
304 308Right-handed 310
Helix 10
AB1
B
16 27Right-handed alpha
Helix 11
AB2
B
38 60Right-handed alpha
Helix 12
AB3
B
62 79Right-handed alpha
Helix 13
AB4
B
81 89Right-handed alpha
Helix 14
AB5
B
90 107Right-handed alpha
Helix 15
AB6
B
217 227Right-handed alpha
Helix 16
AB7
B
269 273Right-handed 310
Helix 17
AB8
B
281 286Right-handed 310
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There are 8 sheets in PDB entry 5TD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
318 319parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
190 194parallel
Strand 3
A
163 167anti-parallel
Strand 4
A
235 241anti-parallel
Strand 5
A
248 253anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
200 206parallel
Strand 3
A
144 152anti-parallel
Strand 4
A
292 296parallel
Strand 5
A
276 279anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
200 206parallel
Strand 3
A
144 152anti-parallel
Strand 4
A
299 300parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
318 319parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
190 194parallel
Strand 3
B
163 167anti-parallel
Strand 4
B
235 241anti-parallel
Strand 5
B
248 253anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
200 206parallel
Strand 3
B
144 152anti-parallel
Strand 4
B
292 296parallel
Strand 5
B
276 279anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
200 206parallel
Strand 3
B
144 152anti-parallel
Strand 4
B
299 300parallel
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