Analysis of interatomic Contacts of Structural Units in PDB entry:
5TD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TD7 entry

There is 1 chain in PDB entry 5TD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1TRP 676
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5TD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 15Right-handed 310
Helix 2
AA2
A
30 43Right-handed alpha
Helix 3
AA3
A
45 49Right-handed 310
Helix 4
AA4
A
58 63Right-handed alpha
Helix 5
AA5
A
67 76Right-handed alpha
Helix 6
AA6
A
77 80Right-handed 310
Helix 7
AA7
A
81 90Right-handed alpha
Helix 8
AA8
A
100 121Right-handed alpha
Helix 9
AA9
A
150 164Right-handed alpha
Helix 10
AB1
A
178 185Right-handed alpha
Helix 11
AB2
A
208 212Right-handed 310
Helix 12
AB3
A
218 222Right-handed 310
Helix 13
AB4
A
236 247Right-handed alpha
Helix 14
AB5
A
247 256Right-handed alpha
Helix 15
AB6
A
281 292Right-handed alpha
Helix 16
AB7
A
293 297Right-handed 310
Helix 17
AB8
A
308 325Right-handed alpha
Helix 18
AB9
A
338 353Right-handed alpha
Helix 19
AC1
A
356 360Right-handed 310
Helix 20
AC2
A
438 453Right-handed alpha
Helix 21
AC3
A
458 476Right-handed alpha
Helix 22
AC4
A
490 503Right-handed alpha
Helix 23
AC5
A
556 568Right-handed alpha
Helix 24
AC6
A
568 577Right-handed alpha
Helix 25
AC7
A
592 596Right-handed 310
Helix 26
AC8
A
597 605Right-handed alpha
Helix 27
AC9
A
606 611Right-handed 310
Helix 28
AD1
A
621 634Right-handed alpha
Helix 29
AD2
A
647 662Right-handed alpha
Helix 30
AD3
A
665 669Right-handed 310
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There are 2 sheets in PDB entry 5TD7. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
5 8parallel
Strand 3
A
126 129parallel
Strand 4
A
299 303parallel
Strand 5
A
259 264parallel
Strand 6
A
168 172parallel
Strand 7
A
191 198parallel
Strand 8
A
225 230parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 432first strand
Strand 2
A
415 418parallel
Strand 3
A
483 488parallel
Strand 4
A
613 618parallel
Strand 5
A
580 585parallel
Strand 6
A
509 515parallel
Strand 7
A
528 535parallel
Strand 8
A
546 550parallel
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