Analysis of interatomic Contacts of Structural Units in PDB entry:
5TD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TD8 entry

There are 4 chains in PDB entry 5TD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 115GLU 682
B
 LEU 13GLN 451
C
 LYS 4LYS 213
D
 ALA 2PRO 151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5TD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 139Right-handed alpha
Helix 2
AA2
A
140 145Right-handed alpha
Helix 3
AA3
A
158 174Right-handed alpha
Helix 4
AA4
A
182 185Right-handed 310
Helix 5
AA5
A
186 195Right-handed alpha
Helix 6
AA6
A
198 202Right-handed 310
Helix 7
AA7
A
203 208Right-handed alpha
Helix 8
AA8
A
214 249Right-handed alpha
Helix 9
AA9
A
266 292Right-handed alpha
Helix 10
AB1
A
297 679Right-handed alpha
Helix 11
AB2
B
14 23Right-handed alpha
Helix 12
AB3
B
39 53Right-handed alpha
Helix 13
AB4
B
56 65Right-handed alpha
Helix 14
AB5
B
81 101Right-handed alpha
Helix 15
AB6
B
108 113Right-handed alpha
Helix 16
AB7
B
115 140Right-handed alpha
Helix 17
AB8
B
140 450Right-handed alpha
Helix 18
AB9
C
10 21Right-handed alpha
Helix 19
AC1
C
23 51Right-handed alpha
Helix 20
AC2
C
57 168Right-handed alpha
Helix 21
AC3
C
199 212Right-handed alpha
Helix 22
AC4
D
3 5Right-handed 310
Helix 23
AC5
D
6 146Right-handed alpha
Helix 24
AC6
D
189 202Right-handed alpha
Helix 25
AC7
D
205 221Right-handed alpha
Helix 26
AC8
E
88 92Right-handed 310
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There are 5 sheets in PDB entry 5TD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 173first strand
Strand 2
C
178 181anti-parallel
Strand 3
C
190 193anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
147 151first strand
Strand 2
D
159 163anti-parallel
Strand 3
D
169 173anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 8first strand
Strand 2
E
19 26anti-parallel
Strand 3
E
79 84anti-parallel
Strand 4
E
69 74anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 13first strand
Strand 2
E
122 126parallel
Strand 3
E
93 99anti-parallel
Strand 4
E
35 40anti-parallel
Strand 5
E
47 52anti-parallel
Strand 6
E
58 59anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 13first strand
Strand 2
E
122 126parallel
Strand 3
E
93 99anti-parallel
Strand 4
E
117 118anti-parallel
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