Analysis of interatomic Contacts of Structural Units in PDB entry:
5TDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TDL entry

There is 1 chain in PDB entry 5TDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 26LEU 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5TDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 96Right-handed alpha
Helix 2
AA2
A
97 99Right-handed 310
Helix 3
AA3
A
148 158Right-handed alpha
Helix 4
AA4
A
162 169Right-handed alpha
Helix 5
AA5
A
170 172Right-handed 310
Helix 6
AA6
A
195 200Right-handed alpha
Helix 7
AA7
A
203 209Right-handed alpha
Helix 8
AA8
A
217 238Right-handed alpha
Helix 9
AA9
A
253 262Right-handed alpha
Helix 10
AB1
A
267 277Right-handed alpha
Helix 11
AB2
A
277 284Right-handed alpha
Helix 12
AB3
A
327 331Right-handed 310
Helix 13
AB4
A
354 358Right-handed 310
Helix 14
AB5
A
370 372Right-handed 310
Helix 15
AB6
A
376 384Right-handed 310
Helix 16
AB7
A
492 508Right-handed alpha
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There are 6 sheets in PDB entry 5TDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 469first strand
Strand 2
A
29 33parallel
Strand 3
A
38 60anti-parallel
Strand 4
A
296 318anti-parallel
Strand 5
A
287 293anti-parallel
Strand 6
A
243 244anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
187 194anti-parallel
Strand 3
A
38 60parallel
Strand 4
A
364 368parallel
Strand 5
A
359 361anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 361first strand
Strand 2
A
364 368anti-parallel
Strand 3
A
38 60parallel
Strand 4
A
296 318anti-parallel
Strand 5
A
340 345anti-parallel
Strand 6
A
348 352anti-parallel
Strand 7
A
373 375anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
333 336anti-parallel
Strand 3
A
394 398anti-parallel
Strand 4
A
486 491anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 407first strand
Strand 2
A
411 416anti-parallel
Strand 3
A
438 443anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 434first strand
Strand 2
A
422 426anti-parallel
Strand 3
A
449 452anti-parallel
Strand 4
A
455 458anti-parallel
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