Analysis of interatomic Contacts of Structural Units in PDB entry:
5TDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TDU entry

There are 4 chains in PDB entry 5TDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 491
B
 SER 2SER 306
C
 SER 2GLU 84
E
 SER 2MET 103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 5TDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 14Right-handed alpha
Helix 2
AA2
A
24 29Right-handed alpha
Helix 3
AA3
A
30 35Right-handed alpha
Helix 4
AA4
A
40 45Right-handed alpha
Helix 5
AA5
A
54 76Right-handed alpha
Helix 6
AA6
A
80 85Right-handed alpha
Helix 7
AA7
A
86 118Right-handed alpha
Helix 8
AA8
A
120 147Right-handed alpha
Helix 9
AA9
A
152 155Right-handed 310
Helix 10
AB1
A
156 161Right-handed alpha
Helix 11
AB2
A
162 164Right-handed 310
Helix 12
AB3
A
166 180Right-handed alpha
Helix 13
AB4
A
184 192Right-handed alpha
Helix 14
AB5
A
200 206Right-handed alpha
Helix 15
AB6
A
206 215Right-handed alpha
Helix 16
AB7
A
217 235Right-handed alpha
Helix 17
AB8
A
237 248Right-handed alpha
Helix 18
AB9
A
250 279Right-handed alpha
Helix 19
AC1
A
282 286Right-handed 310
Helix 20
AC2
A
289 298Right-handed alpha
Helix 21
AC3
A
301 309Right-handed alpha
Helix 22
AC4
A
316 338Right-handed alpha
Helix 23
AC5
A
339 342Right-handed 310
Helix 24
AC6
A
351 362Right-handed alpha
Helix 25
AC7
A
368 382Right-handed alpha
Helix 26
AC8
A
384 389Right-handed 310
Helix 27
AC9
A
408 412Right-handed 310
Helix 28
AD1
A
430 440Right-handed alpha
Helix 29
AD2
A
440 445Right-handed alpha
Helix 30
AD3
A
449 456Right-handed alpha
Helix 31
AD4
A
463 471Right-handed alpha
Helix 32
AD5
A
475 479Right-handed 310
Helix 33
AD6
A
486 491Right-handed 310
Helix 34
AD7
B
23 30Right-handed alpha
Helix 35
AD8
B
33 37Right-handed 310
Helix 36
AD9
B
49 59Right-handed alpha
Helix 37
AE1
B
68 72Right-handed 310
Helix 38
AE2
B
79 104Right-handed alpha
Helix 39
AE3
B
105 110Right-handed 310
Helix 40
AE4
B
113 122Right-handed alpha
Helix 41
AE5
B
124 143Right-handed alpha
Helix 42
AE6
B
145 177Right-handed alpha
Helix 43
AE7
B
185 193Right-handed alpha
Helix 44
AE8
B
193 207Right-handed alpha
Helix 45
AE9
B
211 222Right-handed alpha
Helix 46
AF1
B
222 231Right-handed alpha
Helix 47
AF2
B
231 242Right-handed alpha
Helix 48
AF3
B
245 273Right-handed alpha
Helix 49
AF4
B
274 276Right-handed 310
Helix 50
AF5
B
277 305Right-handed alpha
Helix 51
AF6
C
26 37Right-handed alpha
Helix 52
AF7
C
66 71Right-handed alpha
Helix 53
AF8
E
3 10Right-handed alpha
Helix 54
AF9
E
23 35Right-handed alpha
Helix 55
AG1
E
61 69Right-handed alpha
Helix 56
AG2
E
73 79Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5TDU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 421first strand
Strand 2
A
424 428anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 22first strand
Strand 2
C
3 10anti-parallel
Strand 3
C
77 82parallel
Strand 4
C
50 54anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
41 44first strand
Strand 2
E
48 54anti-parallel
Strand 3
E
13 19anti-parallel
Strand 4
E
81 85anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
56 60first strand
Strand 2
E
94 98anti-parallel
Strand 3
E
87 90anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il