Analysis of interatomic Contacts of Structural Units in PDB entry:
5TDV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TDV entry

There are 5 chains in PDB entry 5TDV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	CYS 492
B	PHE 2	ASP 306
C	SER 2	GLU 83
E	THR 2	MET 102
D	ALA 2	PRO 240

There are115 helices in PDB entry 5TDV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	8	Right-handed 310
Helix 2	AA2	A	9	14	Right-handed alpha
Helix 3	AA3	A	24	29	Right-handed alpha
Helix 4	AA4	A	30	35	Right-handed alpha
Helix 5	AA5	A	40	45	Right-handed alpha
Helix 6	AA6	A	54	76	Right-handed alpha
Helix 7	AA7	A	80	85	Right-handed alpha
Helix 8	AA8	A	86	118	Right-handed alpha
Helix 9	AA9	A	120	147	Right-handed alpha
Helix 10	AB1	A	152	155	Right-handed 310
Helix 11	AB2	A	156	161	Right-handed alpha
Helix 12	AB3	A	162	164	Right-handed 310
Helix 13	AB4	A	166	180	Right-handed alpha
Helix 14	AB5	A	184	192	Right-handed alpha
Helix 15	AB6	A	199	206	Right-handed alpha
Helix 16	AB7	A	206	215	Right-handed alpha
Helix 17	AB8	A	217	235	Right-handed alpha
Helix 18	AB9	A	237	248	Right-handed alpha
Helix 19	AC1	A	250	279	Right-handed alpha
Helix 20	AC2	A	282	286	Right-handed 310
Helix 21	AC3	A	289	298	Right-handed alpha
Helix 22	AC4	A	301	309	Right-handed alpha
Helix 23	AC5	A	316	338	Right-handed alpha
Helix 24	AC6	A	339	342	Right-handed 310
Helix 25	AC7	A	351	362	Right-handed alpha
Helix 26	AC8	A	364	367	Right-handed 310
Helix 27	AC9	A	368	382	Right-handed alpha
Helix 28	AD1	A	384	389	Right-handed 310
Helix 29	AD2	A	408	412	Right-handed 310
Helix 30	AD3	A	430	440	Right-handed alpha
Helix 31	AD4	A	440	445	Right-handed alpha
Helix 32	AD5	A	449	456	Right-handed alpha
Helix 33	AD6	A	463	471	Right-handed alpha
Helix 34	AD7	A	475	479	Right-handed 310
Helix 35	AD8	A	486	492	Right-handed 310
Helix 36	AD9	B	11	15	Right-handed 310
Helix 37	AE1	B	22	29	Right-handed alpha
Helix 38	AE2	B	32	36	Right-handed 310
Helix 39	AE3	B	48	58	Right-handed alpha
Helix 40	AE4	B	67	71	Right-handed 310
Helix 41	AE5	B	78	103	Right-handed alpha
Helix 42	AE6	B	104	109	Right-handed 310
Helix 43	AE7	B	112	121	Right-handed alpha
Helix 44	AE8	B	123	142	Right-handed alpha
Helix 45	AE9	B	144	176	Right-handed alpha
Helix 46	AF1	B	184	192	Right-handed alpha
Helix 47	AF2	B	192	206	Right-handed alpha
Helix 48	AF3	B	210	221	Right-handed alpha
Helix 49	AF4	B	221	230	Right-handed alpha
Helix 50	AF5	B	230	241	Right-handed alpha
Helix 51	AF6	B	244	272	Right-handed alpha
Helix 52	AF7	B	273	275	Right-handed 310
Helix 53	AF8	B	276	304	Right-handed alpha
Helix 54	AF9	C	26	37	Right-handed alpha
Helix 55	AG1	C	67	71	Right-handed 310
Helix 56	AG2	E	3	9	Right-handed alpha
Helix 57	AG3	E	22	34	Right-handed alpha
Helix 58	AG4	E	60	68	Right-handed alpha
Helix 59	AG5	E	72	78	Right-handed 310
Helix 60	AG6	D	5	14	Right-handed alpha
Helix 61	AG7	D	24	29	Right-handed alpha
Helix 62	AG8	D	30	35	Right-handed alpha
Helix 63	AG9	D	40	47	Right-handed 310
Helix 64	AH1	D	54	76	Right-handed alpha
Helix 65	AH2	D	80	85	Right-handed alpha
Helix 66	AH3	D	86	118	Right-handed alpha
Helix 67	AH4	D	120	147	Right-handed alpha
Helix 68	AH5	D	152	155	Right-handed 310
Helix 69	AH6	D	156	161	Right-handed alpha
Helix 70	AH7	D	162	164	Right-handed 310
Helix 71	AH8	D	166	180	Right-handed alpha
Helix 72	AH9	D	184	192	Right-handed alpha
Helix 73	AI1	D	199	206	Right-handed alpha
Helix 74	AI2	D	206	216	Right-handed alpha
Helix 75	AI3	D	217	235	Right-handed alpha
Helix 76	AI4	D	237	248	Right-handed alpha
Helix 77	AI5	D	250	279	Right-handed alpha
Helix 78	AI6	D	282	286	Right-handed 310
Helix 79	AI7	D	289	298	Right-handed alpha
Helix 80	AI8	D	301	309	Right-handed alpha
Helix 81	AI9	D	316	338	Right-handed alpha
Helix 82	AJ1	D	339	342	Right-handed 310
Helix 83	AJ2	D	351	362	Right-handed alpha
Helix 84	AJ3	D	368	382	Right-handed alpha
Helix 85	AJ4	D	384	389	Right-handed 310
Helix 86	AJ5	D	408	412	Right-handed 310
Helix 87	AJ6	D	430	440	Right-handed alpha
Helix 88	AJ7	D	440	445	Right-handed alpha
Helix 89	AJ8	D	449	456	Right-handed alpha
Helix 90	AJ9	D	463	471	Right-handed alpha
Helix 91	AK1	D	475	479	Right-handed 310
Helix 92	AK2	D	486	492	Right-handed 310
Helix 93	AK3	F	11	15	Right-handed 310
Helix 94	AK4	F	22	29	Right-handed alpha
Helix 95	AK5	F	32	36	Right-handed 310
Helix 96	AK6	F	48	58	Right-handed alpha
Helix 97	AK7	F	67	71	Right-handed 310
Helix 98	AK8	F	78	103	Right-handed alpha
Helix 99	AK9	F	104	109	Right-handed 310
Helix 100	AL1	F	112	121	Right-handed alpha
Helix 101	AL2	F	123	142	Right-handed alpha
Helix 102	AL3	F	144	176	Right-handed alpha
Helix 103	AL4	F	184	192	Right-handed alpha
Helix 104	AL5	F	192	206	Right-handed alpha
Helix 105	AL6	F	210	221	Right-handed alpha
Helix 106	AL7	F	221	230	Right-handed alpha
Helix 107	AL8	F	230	241	Right-handed alpha
Helix 108	AL9	F	244	272	Right-handed alpha
Helix 109	AM1	F	273	275	Right-handed 310
Helix 110	AM2	F	276	305	Right-handed alpha
Helix 111	AM3	G	26	36	Right-handed alpha
Helix 112	AM4	H	2	9	Right-handed alpha
Helix 113	AM5	H	22	34	Right-handed alpha
Helix 114	AM6	H	60	68	Right-handed alpha
Helix 115	AM7	H	72	78	Right-handed 310

There are 8 sheets in PDB entry 5TDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	421	first strand
Strand 2	A	424	428	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	22	first strand
Strand 2	C	3	10	anti-parallel
Strand 3	C	77	82	parallel
Strand 4	C	50	54	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	43	first strand
Strand 2	E	47	53	anti-parallel
Strand 3	E	12	18	anti-parallel
Strand 4	E	80	84	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	59	first strand
Strand 2	E	93	97	anti-parallel
Strand 3	E	86	89	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	421	first strand
Strand 2	D	424	428	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	22	first strand
Strand 2	G	3	10	anti-parallel
Strand 3	G	77	82	parallel
Strand 4	G	50	54	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	40	43	first strand
Strand 2	H	47	53	anti-parallel
Strand 3	H	12	18	anti-parallel
Strand 4	H	80	84	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	55	59	first strand
Strand 2	H	93	97	anti-parallel
Strand 3	H	86	89	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TDV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TDV