Analysis of interatomic Contacts of Structural Units in PDB entry:
5TDX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TDX entry

There are 4 chains in PDB entry 5TDX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 261
B
 ALA 2LEU 260
C
 ALA 2GLU 266
D
 ALA 2ALA 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 5TDX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed 310
Helix 2
AA2
A
21 29Right-handed alpha
Helix 3
AA3
A
47 51Right-handed 310
Helix 4
AA4
A
53 58Right-handed alpha
Helix 5
AA5
A
58 68Right-handed alpha
Helix 6
AA6
A
81 93Right-handed alpha
Helix 7
AA7
A
115 125Right-handed alpha
Helix 8
AA8
A
149 157Right-handed alpha
Helix 9
AA9
A
162 173Right-handed alpha
Helix 10
AB1
A
179 186Right-handed alpha
Helix 11
AB2
A
193 197Right-handed 310
Helix 12
AB3
A
211 222Right-handed alpha
Helix 13
AB4
A
236 241Right-handed alpha
Helix 14
AB5
A
241 257Right-handed alpha
Helix 15
AB6
B
15 20Right-handed 310
Helix 16
AB7
B
21 29Right-handed alpha
Helix 17
AB8
B
47 51Right-handed 310
Helix 18
AB9
B
53 58Right-handed alpha
Helix 19
AC1
B
58 67Right-handed alpha
Helix 20
AC2
B
81 93Right-handed alpha
Helix 21
AC3
B
115 125Right-handed alpha
Helix 22
AC4
B
149 157Right-handed alpha
Helix 23
AC5
B
162 173Right-handed alpha
Helix 24
AC6
B
179 186Right-handed alpha
Helix 25
AC7
B
193 197Right-handed 310
Helix 26
AC8
B
211 222Right-handed alpha
Helix 27
AC9
B
236 241Right-handed alpha
Helix 28
AD1
B
241 257Right-handed alpha
Helix 29
AD2
C
15 20Right-handed 310
Helix 30
AD3
C
21 29Right-handed alpha
Helix 31
AD4
C
47 51Right-handed 310
Helix 32
AD5
C
53 58Right-handed alpha
Helix 33
AD6
C
58 68Right-handed alpha
Helix 34
AD7
C
81 93Right-handed alpha
Helix 35
AD8
C
115 125Right-handed alpha
Helix 36
AD9
C
149 157Right-handed alpha
Helix 37
AE1
C
162 173Right-handed alpha
Helix 38
AE2
C
179 186Right-handed alpha
Helix 39
AE3
C
193 197Right-handed 310
Helix 40
AE4
C
211 222Right-handed alpha
Helix 41
AE5
C
236 241Right-handed alpha
Helix 42
AE6
C
241 256Right-handed alpha
Helix 43
AE7
C
258 263Right-handed alpha
Helix 44
AE8
D
15 20Right-handed 310
Helix 45
AE9
D
21 29Right-handed alpha
Helix 46
AF1
D
47 51Right-handed 310
Helix 47
AF2
D
53 58Right-handed alpha
Helix 48
AF3
D
58 68Right-handed alpha
Helix 49
AF4
D
81 93Right-handed alpha
Helix 50
AF5
D
115 125Right-handed alpha
Helix 51
AF6
D
149 157Right-handed alpha
Helix 52
AF7
D
162 173Right-handed alpha
Helix 53
AF8
D
179 186Right-handed alpha
Helix 54
AF9
D
193 197Right-handed 310
Helix 55
AG1
D
211 222Right-handed alpha
Helix 56
AG2
D
236 241Right-handed alpha
Helix 57
AG3
D
241 257Right-handed alpha
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There are 8 sheets in PDB entry 5TDX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
5 9parallel
Strand 3
A
74 80parallel
Strand 4
A
97 105parallel
Strand 5
A
199 203parallel
Strand 6
A
226 229parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 137first strand
Strand 2
A
142 147anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
5 9parallel
Strand 3
B
74 80parallel
Strand 4
B
97 105parallel
Strand 5
B
199 203parallel
Strand 6
B
226 229parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 138first strand
Strand 2
B
141 147anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 36first strand
Strand 2
C
5 9parallel
Strand 3
C
74 80parallel
Strand 4
C
97 105parallel
Strand 5
C
199 203parallel
Strand 6
C
226 229parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 138first strand
Strand 2
C
141 147anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 36first strand
Strand 2
D
5 9parallel
Strand 3
D
74 80parallel
Strand 4
D
97 105parallel
Strand 5
D
199 203parallel
Strand 6
D
226 229parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 137first strand
Strand 2
D
142 147anti-parallel
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