Analysis of interatomic Contacts of Structural Units in PDB entry:
5TED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TED entry

There are 3 chains in PDB entry 5TED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 89ARG 298
A
 SER 89LEU 297
H
 GLY 298HIS 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5TED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
100 102Right-handed 310
Helix 2
AA2
B
104 115Right-handed alpha
Helix 3
AA3
B
116 120Right-handed 310
Helix 4
AA4
B
130 140Right-handed alpha
Helix 5
AA5
B
175 180Right-handed 310
Helix 6
AA6
B
184 189Right-handed 310
Helix 7
AA7
B
202 213Right-handed alpha
Helix 8
AA8
B
225 235Right-handed alpha
Helix 9
AA9
B
245 251Right-handed 310
Helix 10
AB1
B
278 296Right-handed alpha
Helix 11
AB2
A
100 102Right-handed 310
Helix 12
AB3
A
104 115Right-handed alpha
Helix 13
AB4
A
116 120Right-handed 310
Helix 14
AB5
A
130 140Right-handed alpha
Helix 15
AB6
A
175 180Right-handed 310
Helix 16
AB7
A
184 189Right-handed 310
Helix 17
AB8
A
202 213Right-handed alpha
Helix 18
AB9
A
225 235Right-handed alpha
Helix 19
AC1
A
245 251Right-handed 310
Helix 20
AC2
A
278 296Right-handed alpha
Helix 21
AC3
H
299 304Right-handed alpha
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There are 5 sheets in PDB entry 5TED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 129first strand
Strand 2
B
92 98parallel
Strand 3
B
145 148parallel
Strand 4
B
265 272anti-parallel
Strand 5
B
157 165anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
253 258parallel
Strand 3
B
167 172anti-parallel
Strand 4
B
240 243anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 196first strand
Strand 2
B
218 223parallel
Strand 3
A
123 129parallel
Strand 4
A
92 98parallel
Strand 5
A
145 148parallel
Strand 6
A
265 272anti-parallel
Strand 7
A
157 165anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
253 258parallel
Strand 3
A
167 172anti-parallel
Strand 4
A
240 243anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 196first strand
Strand 2
A
218 223parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il