Analysis of interatomic Contacts of Structural Units in PDB entry:
5TEJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TEJ entry

There are 4 chains in PDB entry 5TEJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 269
B	MET 1	LEU 269
C	GLY 0	ASN 267
D	MET 1	LEU 269

There are 40 helices in PDB entry 5TEJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	24	Right-handed alpha
Helix 2	AA2	A	44	49	Right-handed alpha
Helix 3	AA3	A	61	69	Right-handed 310
Helix 4	AA4	A	77	92	Right-handed alpha
Helix 5	AA5	A	103	114	Right-handed alpha
Helix 6	AA6	A	126	144	Right-handed alpha
Helix 7	AA7	A	164	178	Right-handed alpha
Helix 8	AA8	A	181	185	Right-handed alpha
Helix 9	AA9	A	236	251	Right-handed alpha
Helix 10	AB1	A	259	264	Right-handed alpha
Helix 11	AB2	B	11	24	Right-handed alpha
Helix 12	AB3	B	44	49	Right-handed alpha
Helix 13	AB4	B	61	69	Right-handed 310
Helix 14	AB5	B	77	92	Right-handed alpha
Helix 15	AB6	B	103	114	Right-handed alpha
Helix 16	AB7	B	126	144	Right-handed alpha
Helix 17	AB8	B	164	178	Right-handed alpha
Helix 18	AB9	B	181	185	Right-handed alpha
Helix 19	AC1	B	236	252	Right-handed alpha
Helix 20	AC2	B	259	264	Right-handed alpha
Helix 21	AC3	C	11	24	Right-handed alpha
Helix 22	AC4	C	44	49	Right-handed alpha
Helix 23	AC5	C	61	69	Right-handed 310
Helix 24	AC6	C	77	92	Right-handed alpha
Helix 25	AC7	C	103	114	Right-handed alpha
Helix 26	AC8	C	126	144	Right-handed alpha
Helix 27	AC9	C	164	178	Right-handed alpha
Helix 28	AD1	C	181	185	Right-handed alpha
Helix 29	AD2	C	236	251	Right-handed alpha
Helix 30	AD3	C	259	265	Right-handed alpha
Helix 31	AD4	D	11	24	Right-handed alpha
Helix 32	AD5	D	44	49	Right-handed alpha
Helix 33	AD6	D	61	69	Right-handed 310
Helix 34	AD7	D	77	92	Right-handed alpha
Helix 35	AD8	D	103	114	Right-handed alpha
Helix 36	AD9	D	126	144	Right-handed alpha
Helix 37	AE1	D	164	178	Right-handed alpha
Helix 38	AE2	D	181	185	Right-handed alpha
Helix 39	AE3	D	236	251	Right-handed alpha
Helix 40	AE4	D	259	264	Right-handed alpha

There are 10 sheets in PDB entry 5TEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	27	33	parallel
Strand 3	A	2	7	parallel
Strand 4	A	71	74	parallel
Strand 5	A	94	97	parallel
Strand 6	A	118	121	parallel
Strand 7	A	256	258	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	202	208	parallel
Strand 3	A	148	155	parallel
Strand 4	A	215	221	anti-parallel
Strand 5	A	225	233	anti-parallel
Strand 6	D	225	233	anti-parallel
Strand 7	D	215	221	anti-parallel
Strand 8	D	148	155	anti-parallel
Strand 9	D	202	208	parallel
Strand 10	D	186	187	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	C	192	193	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	C	161	162	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	27	33	parallel
Strand 3	B	2	7	parallel
Strand 4	B	71	74	parallel
Strand 5	B	94	97	parallel
Strand 6	B	118	121	parallel
Strand 7	B	256	258	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	202	208	parallel
Strand 3	B	148	155	parallel
Strand 4	B	214	221	anti-parallel
Strand 5	B	225	233	anti-parallel
Strand 6	C	225	233	anti-parallel
Strand 7	C	215	221	anti-parallel
Strand 8	C	148	155	anti-parallel
Strand 9	C	202	208	parallel
Strand 10	C	186	187	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	162	first strand
Strand 2	D	192	193	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	D	161	162	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	59	first strand
Strand 2	C	27	33	parallel
Strand 3	C	2	7	parallel
Strand 4	C	71	74	parallel
Strand 5	C	94	97	parallel
Strand 6	C	118	121	parallel
Strand 7	C	256	258	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	59	first strand
Strand 2	D	27	33	parallel
Strand 3	D	2	7	parallel
Strand 4	D	71	74	parallel
Strand 5	D	94	97	parallel
Strand 6	D	118	121	parallel
Strand 7	D	256	258	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TEJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TEJ