Analysis of interatomic Contacts of Structural Units in PDB entry:
5TEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TEV entry

There are 2 chains in PDB entry 5TEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LYS 336
B
 SER 2LYS 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5TEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 24Right-handed alpha
Helix 2
AA2
A
24 33Right-handed alpha
Helix 3
AA3
A
44 49Right-handed alpha
Helix 4
AA4
A
54 72Right-handed alpha
Helix 5
AA5
A
87 99Right-handed alpha
Helix 6
AA6
A
102 108Right-handed alpha
Helix 7
AA7
A
109 122Right-handed alpha
Helix 8
AA8
A
132 148Right-handed alpha
Helix 9
AA9
A
157 159Right-handed 310
Helix 10
AB1
A
160 178Right-handed alpha
Helix 11
AB2
A
205 209Right-handed 310
Helix 12
AB3
A
217 227Right-handed alpha
Helix 13
AB4
A
240 244Right-handed 310
Helix 14
AB5
A
245 253Right-handed alpha
Helix 15
AB6
A
255 267Right-handed alpha
Helix 16
AB7
A
271 300Right-handed alpha
Helix 17
AB8
A
301 330Right-handed alpha
Helix 18
AB9
B
17 24Right-handed alpha
Helix 19
AC1
B
24 32Right-handed alpha
Helix 20
AC2
B
46 51Right-handed 310
Helix 21
AC3
B
54 72Right-handed alpha
Helix 22
AC4
B
87 101Right-handed alpha
Helix 23
AC5
B
102 108Right-handed alpha
Helix 24
AC6
B
109 122Right-handed alpha
Helix 25
AC7
B
132 148Right-handed alpha
Helix 26
AC8
B
157 159Right-handed 310
Helix 27
AC9
B
160 178Right-handed alpha
Helix 28
AD1
B
205 209Right-handed 310
Helix 29
AD2
B
217 227Right-handed alpha
Helix 30
AD3
B
240 244Right-handed 310
Helix 31
AD4
B
245 253Right-handed alpha
Helix 32
AD5
B
255 268Right-handed alpha
Helix 33
AD6
B
271 300Right-handed alpha
Helix 34
AD7
B
301 330Right-handed alpha
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There are 4 sheets in PDB entry 5TEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 10first strand
Strand 2
A
37 43parallel
Strand 3
A
80 83parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 155first strand
Strand 2
A
186 188parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 11first strand
Strand 2
B
37 44parallel
Strand 3
B
80 83parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
186 188parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il