Analysis of interatomic Contacts of Structural Units in PDB entry:
5TF0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TF0 entry

There are 2 chains in PDB entry 5TF0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 29	LEU 772
B	PRO 28	ASP 595

There are 55 helices in PDB entry 5TF0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	41	Right-handed alpha
Helix 2	AA2	A	43	51	Right-handed alpha
Helix 3	AA3	A	68	76	Right-handed alpha
Helix 4	AA4	A	86	101	Right-handed alpha
Helix 5	AA5	A	123	129	Right-handed alpha
Helix 6	AA6	A	132	150	Right-handed alpha
Helix 7	AA7	A	168	174	Right-handed 310
Helix 8	AA8	A	178	195	Right-handed alpha
Helix 9	AA9	A	197	201	Right-handed 310
Helix 10	AB1	A	217	225	Right-handed 310
Helix 11	AB2	A	233	241	Right-handed alpha
Helix 12	AB3	A	242	251	Right-handed alpha
Helix 13	AB4	A	271	276	Right-handed alpha
Helix 14	AB5	A	294	303	Right-handed alpha
Helix 15	AB6	A	306	318	Right-handed alpha
Helix 16	AB7	A	326	338	Right-handed alpha
Helix 17	AB8	A	342	360	Right-handed alpha
Helix 18	AB9	A	373	379	Right-handed alpha
Helix 19	AC1	A	381	394	Right-handed alpha
Helix 20	AC2	A	448	457	Right-handed alpha
Helix 21	AC3	A	474	482	Right-handed alpha
Helix 22	AC4	A	494	508	Right-handed alpha
Helix 23	AC5	A	519	523	Right-handed 310
Helix 24	AC6	A	535	547	Right-handed alpha
Helix 25	AC7	A	564	571	Right-handed alpha
Helix 26	AC8	A	583	593	Right-handed alpha
Helix 27	AC9	A	609	613	Right-handed 310
Helix 28	AD1	A	734	739	Right-handed 310
Helix 29	AD2	B	29	40	Right-handed alpha
Helix 30	AD3	B	43	51	Right-handed alpha
Helix 31	AD4	B	69	75	Right-handed alpha
Helix 32	AD5	B	86	100	Right-handed alpha
Helix 33	AD6	B	123	129	Right-handed alpha
Helix 34	AD7	B	132	150	Right-handed alpha
Helix 35	AD8	B	168	174	Right-handed 310
Helix 36	AD9	B	178	195	Right-handed alpha
Helix 37	AE1	B	217	225	Right-handed 310
Helix 38	AE2	B	233	241	Right-handed alpha
Helix 39	AE3	B	242	251	Right-handed alpha
Helix 40	AE4	B	271	276	Right-handed alpha
Helix 41	AE5	B	297	303	Right-handed alpha
Helix 42	AE6	B	306	318	Right-handed alpha
Helix 43	AE7	B	326	338	Right-handed alpha
Helix 44	AE8	B	342	360	Right-handed alpha
Helix 45	AE9	B	373	379	Right-handed alpha
Helix 46	AF1	B	381	394	Right-handed alpha
Helix 47	AF2	B	448	457	Right-handed alpha
Helix 48	AF3	B	474	482	Right-handed alpha
Helix 49	AF4	B	494	507	Right-handed alpha
Helix 50	AF5	B	519	523	Right-handed 310
Helix 51	AF6	B	535	547	Right-handed alpha
Helix 52	AF7	B	564	571	Right-handed alpha
Helix 53	AF8	B	583	593	Right-handed alpha
Helix 54	AF9	B	609	613	Right-handed 310
Helix 55	AG1	B	734	739	Right-handed 310

There are 17 sheets in PDB entry 5TF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	322	323	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	108	111	parallel
Strand 3	A	154	159	parallel
Strand 4	A	209	215	parallel
Strand 5	A	255	258	parallel
Strand 6	A	288	291	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	266	267	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	401	first strand
Strand 2	A	573	578	anti-parallel
Strand 3	A	552	557	parallel
Strand 4	A	511	517	parallel
Strand 5	A	419	423	parallel
Strand 6	A	462	466	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	661	first strand
Strand 2	A	677	685	anti-parallel
Strand 3	A	665	666	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	661	first strand
Strand 2	A	677	685	anti-parallel
Strand 3	A	726	733	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	721	first strand
Strand 2	A	691	701	anti-parallel
Strand 3	A	752	761	anti-parallel
Strand 4	A	764	772	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	740	741	first strand
Strand 2	A	747	748	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	322	323	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	108	111	parallel
Strand 3	B	154	155	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	215	first strand
Strand 2	B	255	258	parallel
Strand 3	B	288	290	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	266	267	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	401	first strand
Strand 2	B	573	578	anti-parallel
Strand 3	B	552	557	parallel
Strand 4	B	511	517	parallel
Strand 5	B	419	423	parallel
Strand 6	B	462	466	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	659	661	first strand
Strand 2	B	677	685	anti-parallel
Strand 3	B	665	666	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	659	661	first strand
Strand 2	B	677	685	anti-parallel
Strand 3	B	726	733	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	721	first strand
Strand 2	B	691	701	anti-parallel
Strand 3	B	752	761	anti-parallel
Strand 4	B	764	772	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	740	741	first strand
Strand 2	B	747	748	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TF0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TF0