Analysis of interatomic Contacts of Structural Units in PDB entry:
5TF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TF4 entry

There are 6 chains in PDB entry 5TF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4ILE 267
B
 GLY 4VAL 262
C
 GLY 4ASP 263
D
 GLY 4LYS 271
E
 GLY 4LYS 271
F
 GLY 6ASN 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 5TF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 35Right-handed alpha
Helix 2
AA2
A
44 59Right-handed alpha
Helix 3
AA3
A
71 87Right-handed alpha
Helix 4
AA4
A
100 104Right-handed 310
Helix 5
AA5
A
107 111Right-handed 310
Helix 6
AA6
A
112 124Right-handed alpha
Helix 7
AA7
A
124 135Right-handed alpha
Helix 8
AA8
A
149 153Right-handed 310
Helix 9
AA9
A
159 181Right-handed alpha
Helix 10
AB1
A
182 184Right-handed 310
Helix 11
AB2
A
198 203Right-handed 310
Helix 12
AB3
A
205 217Right-handed alpha
Helix 13
AB4
A
224 237Right-handed alpha
Helix 14
AB5
A
238 241Right-handed 310
Helix 15
AB6
A
253 257Right-handed 310
Helix 16
AB7
B
23 35Right-handed alpha
Helix 17
AB8
B
44 59Right-handed alpha
Helix 18
AB9
B
71 87Right-handed alpha
Helix 19
AC1
B
100 104Right-handed 310
Helix 20
AC2
B
107 111Right-handed 310
Helix 21
AC3
B
112 124Right-handed alpha
Helix 22
AC4
B
124 138Right-handed alpha
Helix 23
AC5
B
149 153Right-handed 310
Helix 24
AC6
B
160 181Right-handed alpha
Helix 25
AC7
B
199 203Right-handed 310
Helix 26
AC8
B
205 217Right-handed alpha
Helix 27
AC9
B
224 237Right-handed alpha
Helix 28
AD1
B
238 241Right-handed 310
Helix 29
AD2
B
253 257Right-handed 310
Helix 30
AD3
C
23 35Right-handed alpha
Helix 31
AD4
C
44 59Right-handed alpha
Helix 32
AD5
C
71 87Right-handed alpha
Helix 33
AD6
C
100 104Right-handed 310
Helix 34
AD7
C
107 111Right-handed 310
Helix 35
AD8
C
112 124Right-handed alpha
Helix 36
AD9
C
124 137Right-handed alpha
Helix 37
AE1
C
149 153Right-handed 310
Helix 38
AE2
C
159 181Right-handed alpha
Helix 39
AE3
C
198 202Right-handed 310
Helix 40
AE4
C
205 217Right-handed alpha
Helix 41
AE5
C
224 237Right-handed alpha
Helix 42
AE6
C
238 241Right-handed 310
Helix 43
AE7
C
253 257Right-handed 310
Helix 44
AE8
D
23 35Right-handed alpha
Helix 45
AE9
D
45 59Right-handed alpha
Helix 46
AF1
D
71 86Right-handed alpha
Helix 47
AF2
D
100 104Right-handed 310
Helix 48
AF3
D
107 111Right-handed 310
Helix 49
AF4
D
112 124Right-handed alpha
Helix 50
AF5
D
124 138Right-handed alpha
Helix 51
AF6
D
149 153Right-handed 310
Helix 52
AF7
D
160 181Right-handed alpha
Helix 53
AF8
D
199 203Right-handed 310
Helix 54
AF9
D
205 217Right-handed alpha
Helix 55
AG1
D
224 237Right-handed alpha
Helix 56
AG2
D
238 241Right-handed 310
Helix 57
AG3
D
253 257Right-handed 310
Helix 58
AG4
E
23 35Right-handed alpha
Helix 59
AG5
E
45 59Right-handed alpha
Helix 60
AG6
E
71 86Right-handed alpha
Helix 61
AG7
E
107 111Right-handed 310
Helix 62
AG8
E
112 124Right-handed alpha
Helix 63
AG9
E
124 135Right-handed alpha
Helix 64
AH1
E
149 153Right-handed 310
Helix 65
AH2
E
160 181Right-handed alpha
Helix 66
AH3
E
182 184Right-handed 310
Helix 67
AH4
E
207 217Right-handed alpha
Helix 68
AH5
E
224 237Right-handed alpha
Helix 69
AH6
E
238 241Right-handed 310
Helix 70
AH7
E
253 257Right-handed 310
Helix 71
AH8
F
23 35Right-handed alpha
Helix 72
AH9
F
44 59Right-handed alpha
Helix 73
AI1
F
71 86Right-handed alpha
Helix 74
AI2
F
100 104Right-handed 310
Helix 75
AI3
F
107 111Right-handed 310
Helix 76
AI4
F
112 124Right-handed alpha
Helix 77
AI5
F
124 138Right-handed alpha
Helix 78
AI6
F
149 153Right-handed 310
Helix 79
AI7
F
160 181Right-handed alpha
Helix 80
AI8
F
197 202Right-handed alpha
Helix 81
AI9
F
205 217Right-handed alpha
Helix 82
AJ1
F
224 237Right-handed alpha
Helix 83
AJ2
F
238 241Right-handed 310
Helix 84
AJ3
F
253 257Right-handed 310
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There are 6 sheets in PDB entry 5TF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
38 43parallel
Strand 3
A
12 16parallel
Strand 4
A
89 94parallel
Strand 5
A
138 148parallel
Strand 6
A
186 192parallel
Strand 7
A
247 250parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 66first strand
Strand 2
B
38 43parallel
Strand 3
B
12 16parallel
Strand 4
B
91 94parallel
Strand 5
B
142 148parallel
Strand 6
B
185 192parallel
Strand 7
B
247 250parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 66first strand
Strand 2
C
38 43parallel
Strand 3
C
12 16parallel
Strand 4
C
91 94parallel
Strand 5
C
142 148parallel
Strand 6
C
185 192parallel
Strand 7
C
247 250parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 66first strand
Strand 2
D
38 43parallel
Strand 3
D
12 16parallel
Strand 4
D
91 94parallel
Strand 5
D
142 148parallel
Strand 6
D
185 192parallel
Strand 7
D
247 250parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
62 66first strand
Strand 2
E
38 43parallel
Strand 3
E
12 16parallel
Strand 4
E
89 94parallel
Strand 5
E
138 148parallel
Strand 6
E
186 192parallel
Strand 7
E
247 250parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
62 66first strand
Strand 2
F
38 43parallel
Strand 3
F
12 16parallel
Strand 4
F
91 94parallel
Strand 5
F
142 148parallel
Strand 6
F
185 192parallel
Strand 7
F
247 250parallel
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