Analysis of interatomic Contacts of Structural Units in PDB entry:
5TF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TF9 entry

There are 2 chains in PDB entry 5TF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 210THR 483
B
 GLU 206GLN 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 5TF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
258 273Right-handed alpha
Helix 2
AA2
A
308 314Right-handed alpha
Helix 3
AA3
A
320 340Right-handed alpha
Helix 4
AA4
A
391 396Right-handed alpha
Helix 5
AA5
A
401 418Right-handed alpha
Helix 6
AA6
A
427 437Right-handed alpha
Helix 7
AA7
A
441 447Right-handed 310
Helix 8
AA8
A
449 460Right-handed alpha
Helix 9
AA9
A
463 467Right-handed 310
Helix 10
AB1
A
469 475Right-handed alpha
Helix 11
AB2
A
476 481Right-handed alpha
Helix 12
AB3
B
258 273Right-handed alpha
Helix 13
AB4
B
308 314Right-handed alpha
Helix 14
AB5
B
320 340Right-handed alpha
Helix 15
AB6
B
351 353Right-handed 310
Helix 16
AB7
B
391 397Right-handed alpha
Helix 17
AB8
B
401 418Right-handed alpha
Helix 18
AB9
B
427 437Right-handed alpha
Helix 19
AC1
B
441 447Right-handed 310
Helix 20
AC2
B
449 460Right-handed alpha
Helix 21
AC3
B
463 467Right-handed 310
Helix 22
AC4
B
469 475Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5TF9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
220 229anti-parallel
Strand 3
A
233 240anti-parallel
Strand 4
A
245 252anti-parallel
Strand 5
A
297 302anti-parallel
Strand 6
A
283 288anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 346first strand
Strand 2
A
373 374anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 358first strand
Strand 2
A
363 366anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 214first strand
Strand 2
B
220 229anti-parallel
Strand 3
B
233 240anti-parallel
Strand 4
B
246 252anti-parallel
Strand 5
B
295 302anti-parallel
Strand 6
B
283 290anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
345 346first strand
Strand 2
B
373 374anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 357first strand
Strand 2
B
364 366anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il