Analysis of interatomic Contacts of Structural Units in PDB entry:
5TFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TFN entry

There are 2 chains in PDB entry 5TFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 50SER 1160
B
 VAL 49LYS 1157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 2 helices in PDB entry 5TFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1049 1054Right-handed alpha
Helix 2
AA2
B
1049 1054Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5TFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1065first strand
Strand 2
A
1058 1060anti-parallel
Strand 3
A
51 57parallel
Strand 4
A
1021 1028anti-parallel
Strand 5
A
1033 1042anti-parallel
Strand 6
A
1045 1048anti-parallel
Strand 7
A
1076 1079anti-parallel
Strand 8
A
1067 1071anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1107 1111first strand
Strand 2
A
1095 1099anti-parallel
Strand 3
A
1138 1140anti-parallel
Strand 4
A
1146 1149anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1118first strand
Strand 2
A
1121 1125anti-parallel
Strand 3
A
1154 1155anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1063 1065first strand
Strand 2
B
1058 1060anti-parallel
Strand 3
B
51 57parallel
Strand 4
B
1021 1028anti-parallel
Strand 5
B
1033 1042anti-parallel
Strand 6
B
1045 1048anti-parallel
Strand 7
B
1076 1079anti-parallel
Strand 8
B
1067 1071anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1107 1111first strand
Strand 2
B
1095 1099anti-parallel
Strand 3
B
1138 1140anti-parallel
Strand 4
B
1146 1149anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1114 1118first strand
Strand 2
B
1121 1125anti-parallel
Strand 3
B
1154 1155anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il