Analysis of interatomic Contacts of Structural Units in PDB entry:
5TGC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TGC entry

There are 2 chains in PDB entry 5TGC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 0	THR 462
B	ALA 2	ILE 218

There are 76 helices in PDB entry 5TGC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	61	Right-handed alpha
Helix 2	AA2	A	79	93	Right-handed alpha
Helix 3	AA3	A	115	128	Right-handed alpha
Helix 4	AA4	A	141	149	Right-handed alpha
Helix 5	AA5	A	185	202	Right-handed alpha
Helix 6	AA6	A	216	226	Right-handed alpha
Helix 7	AA7	A	226	235	Right-handed alpha
Helix 8	AA8	A	242	269	Right-handed alpha
Helix 9	AA9	A	282	285	Right-handed 310
Helix 10	AB1	A	303	315	Right-handed alpha
Helix 11	AB2	A	316	319	Right-handed 310
Helix 12	AB3	A	324	327	Right-handed 310
Helix 13	AB4	A	328	343	Right-handed alpha
Helix 14	AB5	A	380	391	Right-handed alpha
Helix 15	AB6	A	396	401	Right-handed 310
Helix 16	AB7	A	403	416	Right-handed alpha
Helix 17	AB8	A	428	445	Right-handed alpha
Helix 18	AB9	A	448	452	Right-handed 310
Helix 19	AC1	B	5	8	Right-handed 310
Helix 20	AC2	B	75	98	Right-handed alpha
Helix 21	AC3	B	100	104	Right-handed 310
Helix 22	AC4	B	120	134	Right-handed alpha
Helix 23	AC5	B	145	153	Right-handed alpha
Helix 24	AC6	B	181	184	Right-handed 310
Helix 25	AC7	B	190	202	Right-handed alpha
Helix 26	AC8	B	206	216	Right-handed alpha
Helix 27	AC9	B	295	300	Right-handed 310
Helix 28	AD1	B	302	319	Right-handed alpha
Helix 29	AD2	B	322	332	Right-handed alpha
Helix 30	AD3	B	339	342	Right-handed 310
Helix 31	AD4	B	344	358	Right-handed alpha
Helix 32	AD5	B	362	373	Right-handed alpha
Helix 33	AD6	B	423	442	Right-handed alpha
Helix 34	AD7	B	451	457	Right-handed alpha
Helix 35	AD8	B	458	463	Right-handed 310
Helix 36	AD9	C	2	10	Right-handed alpha
Helix 37	AE1	D	50	60	Right-handed alpha
Helix 38	AE2	D	79	93	Right-handed alpha
Helix 39	AE3	D	115	128	Right-handed alpha
Helix 40	AE4	D	141	149	Right-handed alpha
Helix 41	AE5	D	185	203	Right-handed alpha
Helix 42	AE6	D	216	226	Right-handed alpha
Helix 43	AE7	D	226	235	Right-handed alpha
Helix 44	AE8	D	242	259	Right-handed alpha
Helix 45	AE9	D	260	266	Right-handed 310
Helix 46	AF1	D	282	285	Right-handed 310
Helix 47	AF2	D	303	315	Right-handed alpha
Helix 48	AF3	D	316	319	Right-handed 310
Helix 49	AF4	D	324	327	Right-handed 310
Helix 50	AF5	D	328	343	Right-handed alpha
Helix 51	AF6	D	380	391	Right-handed alpha
Helix 52	AF7	D	396	401	Right-handed 310
Helix 53	AF8	D	403	416	Right-handed alpha
Helix 54	AF9	D	428	445	Right-handed alpha
Helix 55	AG1	D	448	452	Right-handed 310
Helix 56	AG2	D	456	463	Right-handed alpha
Helix 57	AG3	E	5	8	Right-handed 310
Helix 58	AG4	E	75	98	Right-handed alpha
Helix 59	AG5	E	99	104	Right-handed 310
Helix 60	AG6	E	120	134	Right-handed alpha
Helix 61	AG7	E	145	153	Right-handed alpha
Helix 62	AG8	E	190	202	Right-handed alpha
Helix 63	AG9	E	206	215	Right-handed alpha
Helix 64	AH1	E	275	279	Right-handed 310
Helix 65	AH2	E	295	300	Right-handed 310
Helix 66	AH3	E	302	319	Right-handed alpha
Helix 67	AH4	E	322	332	Right-handed alpha
Helix 68	AH5	E	339	342	Right-handed 310
Helix 69	AH6	E	344	358	Right-handed alpha
Helix 70	AH7	E	362	373	Right-handed alpha
Helix 71	AH8	E	416	420	Right-handed 310
Helix 72	AH9	E	424	440	Right-handed alpha
Helix 73	AI1	E	451	458	Right-handed alpha
Helix 74	AI2	E	459	464	Right-handed 310
Helix 75	AI3	F	2	10	Right-handed alpha
Helix 76	AI4	F	83	88	Right-handed 310

There are 24 sheets in PDB entry 5TGC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	104	108	parallel
Strand 5	A	135	140	parallel
Strand 6	A	454	456	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	66	69	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	174	first strand
Strand 2	A	164	170	anti-parallel
Strand 3	A	180	181	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	174	first strand
Strand 2	A	164	170	anti-parallel
Strand 3	A	154	159	anti-parallel
Strand 4	A	392	395	parallel
Strand 5	A	423	425	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	292	first strand
Strand 2	A	297	302	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	18	23	anti-parallel
Strand 3	B	10	13	anti-parallel
Strand 4	B	111	115	parallel
Strand 5	B	139	144	parallel
Strand 6	B	448	450	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	51	54	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	72	73	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	169	175	anti-parallel
Strand 3	B	185	187	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	169	175	anti-parallel
Strand 3	B	159	164	anti-parallel
Strand 4	B	333	337	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	285	first strand
Strand 2	B	291	294	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	30	first strand
Strand 2	C	60	65	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	104	108	parallel
Strand 5	D	136	140	parallel
Strand 6	D	454	455	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	34	39	anti-parallel
Strand 3	D	65	69	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	174	first strand
Strand 2	D	164	170	anti-parallel
Strand 3	D	180	181	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	174	first strand
Strand 2	D	164	170	anti-parallel
Strand 3	D	154	159	anti-parallel
Strand 4	D	392	395	parallel
Strand 5	D	423	424	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	292	first strand
Strand 2	D	297	302	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	10	13	anti-parallel
Strand 4	E	111	115	parallel
Strand 5	E	139	144	parallel
Strand 6	E	449	450	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	41	45	anti-parallel
Strand 3	E	63	65	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	69	first strand
Strand 2	E	72	73	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	179	first strand
Strand 2	E	169	175	anti-parallel
Strand 3	E	185	187	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	179	first strand
Strand 2	E	169	175	anti-parallel
Strand 3	E	159	164	anti-parallel
Strand 4	E	333	337	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	282	285	first strand
Strand 2	E	291	294	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	30	first strand
Strand 2	F	60	65	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TGC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TGC