Analysis of interatomic Contacts of Structural Units in PDB entry:
5TGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TGD entry

There are 4 chains in PDB entry 5TGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 14ILE 262
B
 MET 17ALA 263
C
 ALA 15ALA 263
D
 VAL 18ALA 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 5TGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 21Right-handed 310
Helix 2
AA2
A
30 43Right-handed alpha
Helix 3
AA3
A
54 68Right-handed alpha
Helix 4
AA4
A
85 95Right-handed alpha
Helix 5
AA5
A
116 128Right-handed alpha
Helix 6
AA6
A
128 142Right-handed alpha
Helix 7
AA7
A
155 160Right-handed 310
Helix 8
AA8
A
165 187Right-handed alpha
Helix 9
AA9
A
207 217Right-handed alpha
Helix 10
AB1
A
226 239Right-handed alpha
Helix 11
AB2
A
252 256Right-handed 310
Helix 12
AB3
B
17 21Right-handed 310
Helix 13
AB4
B
30 43Right-handed alpha
Helix 14
AB5
B
54 68Right-handed alpha
Helix 15
AB6
B
85 95Right-handed alpha
Helix 16
AB7
B
116 128Right-handed alpha
Helix 17
AB8
B
128 142Right-handed alpha
Helix 18
AB9
B
155 160Right-handed 310
Helix 19
AC1
B
165 187Right-handed alpha
Helix 20
AC2
B
207 217Right-handed alpha
Helix 21
AC3
B
226 239Right-handed alpha
Helix 22
AC4
B
252 256Right-handed 310
Helix 23
AC5
C
17 21Right-handed 310
Helix 24
AC6
C
30 43Right-handed alpha
Helix 25
AC7
C
54 68Right-handed alpha
Helix 26
AC8
C
85 95Right-handed alpha
Helix 27
AC9
C
116 128Right-handed alpha
Helix 28
AD1
C
128 142Right-handed alpha
Helix 29
AD2
C
155 160Right-handed 310
Helix 30
AD3
C
165 187Right-handed alpha
Helix 31
AD4
C
207 217Right-handed alpha
Helix 32
AD5
C
226 239Right-handed alpha
Helix 33
AD6
C
252 256Right-handed 310
Helix 34
AD7
D
30 43Right-handed alpha
Helix 35
AD8
D
54 68Right-handed alpha
Helix 36
AD9
D
85 95Right-handed alpha
Helix 37
AE1
D
116 128Right-handed alpha
Helix 38
AE2
D
128 142Right-handed alpha
Helix 39
AE3
D
155 160Right-handed 310
Helix 40
AE4
D
165 187Right-handed alpha
Helix 41
AE5
D
212 217Right-handed alpha
Helix 42
AE6
D
226 239Right-handed alpha
Helix 43
AE7
D
252 256Right-handed 310
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There are 4 sheets in PDB entry 5TGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 76first strand
Strand 2
A
47 51parallel
Strand 3
A
23 25parallel
Strand 4
A
99 102parallel
Strand 5
A
148 153parallel
Strand 6
A
190 197parallel
Strand 7
A
246 249parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 76first strand
Strand 2
B
47 51parallel
Strand 3
B
23 25parallel
Strand 4
B
99 102parallel
Strand 5
B
148 153parallel
Strand 6
B
190 197parallel
Strand 7
B
246 249parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 76first strand
Strand 2
C
47 51parallel
Strand 3
C
23 25parallel
Strand 4
C
99 102parallel
Strand 5
C
148 153parallel
Strand 6
C
190 197parallel
Strand 7
C
246 249parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
72 76first strand
Strand 2
D
47 51parallel
Strand 3
D
23 25parallel
Strand 4
D
99 102parallel
Strand 5
D
148 153parallel
Strand 6
D
190 197parallel
Strand 7
D
246 249parallel
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