Analysis of interatomic Contacts of Structural Units in PDB entry:
5TGF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TGF entry

There are 4 chains in PDB entry 5TGF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 7	GLN 339
B	THR 7	GLN 339
C	THR 7	GLN 339
D	THR 7	GLN 339

There are 60 helices in PDB entry 5TGF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	59	75	Right-handed alpha
Helix 3	AA3	A	82	87	Right-handed alpha
Helix 4	AA4	A	88	91	Right-handed 310
Helix 5	AA5	A	93	98	Right-handed 310
Helix 6	AA6	A	99	104	Right-handed alpha
Helix 7	AA7	A	124	134	Right-handed alpha
Helix 8	AA8	A	149	164	Right-handed alpha
Helix 9	AA9	A	166	175	Right-handed alpha
Helix 10	AB1	A	175	180	Right-handed alpha
Helix 11	AB2	A	197	202	Right-handed alpha
Helix 12	AB3	A	206	219	Right-handed alpha
Helix 13	AB4	A	230	239	Right-handed alpha
Helix 14	AB5	A	251	258	Right-handed alpha
Helix 15	AB6	A	327	338	Right-handed alpha
Helix 16	AB7	B	10	23	Right-handed alpha
Helix 17	AB8	B	59	75	Right-handed alpha
Helix 18	AB9	B	82	87	Right-handed alpha
Helix 19	AC1	B	88	91	Right-handed 310
Helix 20	AC2	B	93	98	Right-handed 310
Helix 21	AC3	B	99	104	Right-handed alpha
Helix 22	AC4	B	124	134	Right-handed alpha
Helix 23	AC5	B	149	164	Right-handed alpha
Helix 24	AC6	B	166	175	Right-handed alpha
Helix 25	AC7	B	176	180	Right-handed 310
Helix 26	AC8	B	197	202	Right-handed alpha
Helix 27	AC9	B	206	219	Right-handed alpha
Helix 28	AD1	B	230	239	Right-handed alpha
Helix 29	AD2	B	251	258	Right-handed alpha
Helix 30	AD3	B	327	338	Right-handed alpha
Helix 31	AD4	C	10	23	Right-handed alpha
Helix 32	AD5	C	59	75	Right-handed alpha
Helix 33	AD6	C	82	87	Right-handed alpha
Helix 34	AD7	C	88	91	Right-handed 310
Helix 35	AD8	C	93	98	Right-handed 310
Helix 36	AD9	C	99	104	Right-handed alpha
Helix 37	AE1	C	124	134	Right-handed alpha
Helix 38	AE2	C	149	164	Right-handed alpha
Helix 39	AE3	C	166	175	Right-handed alpha
Helix 40	AE4	C	175	180	Right-handed alpha
Helix 41	AE5	C	197	202	Right-handed alpha
Helix 42	AE6	C	206	219	Right-handed alpha
Helix 43	AE7	C	230	239	Right-handed alpha
Helix 44	AE8	C	251	258	Right-handed alpha
Helix 45	AE9	C	327	338	Right-handed alpha
Helix 46	AF1	D	10	23	Right-handed alpha
Helix 47	AF2	D	59	75	Right-handed alpha
Helix 48	AF3	D	82	87	Right-handed alpha
Helix 49	AF4	D	88	91	Right-handed 310
Helix 50	AF5	D	93	98	Right-handed 310
Helix 51	AF6	D	99	104	Right-handed alpha
Helix 52	AF7	D	124	134	Right-handed alpha
Helix 53	AF8	D	149	164	Right-handed alpha
Helix 54	AF9	D	166	175	Right-handed alpha
Helix 55	AG1	D	175	180	Right-handed alpha
Helix 56	AG2	D	197	202	Right-handed alpha
Helix 57	AG3	D	206	219	Right-handed alpha
Helix 58	AG4	D	230	239	Right-handed alpha
Helix 59	AG5	D	251	258	Right-handed alpha
Helix 60	AG6	D	327	338	Right-handed alpha

There are 12 sheets in PDB entry 5TGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	46	first strand
Strand 2	A	28	35	anti-parallel
Strand 3	A	302	307	anti-parallel
Strand 4	A	293	297	anti-parallel
Strand 5	A	281	285	anti-parallel
Strand 6	A	270	274	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	204	205	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	226	227	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	45	first strand
Strand 2	B	29	35	anti-parallel
Strand 3	B	302	307	anti-parallel
Strand 4	B	293	297	anti-parallel
Strand 5	B	281	285	anti-parallel
Strand 6	B	270	274	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	204	205	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	223	first strand
Strand 2	B	226	227	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	45	first strand
Strand 2	C	29	35	anti-parallel
Strand 3	C	302	307	anti-parallel
Strand 4	C	293	297	anti-parallel
Strand 5	C	281	285	anti-parallel
Strand 6	C	270	274	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	204	205	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	223	first strand
Strand 2	C	226	227	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	45	first strand
Strand 2	D	29	35	anti-parallel
Strand 3	D	302	307	anti-parallel
Strand 4	D	293	297	anti-parallel
Strand 5	D	281	285	anti-parallel
Strand 6	D	270	274	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	204	205	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	223	first strand
Strand 2	D	226	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TGF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TGF