Analysis of interatomic Contacts of Structural Units in PDB entry:
5TGS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5TGS entry

There are 2 chains in PDB entry 5TGS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2TRP 237
B
 ALA 2ASN 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5TGS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 47Right-handed 310
Helix 2
AA2
A
59 72Right-handed alpha
Helix 3
AA3
A
84 89Right-handed 310
Helix 4
AA4
A
90 101Right-handed alpha
Helix 5
AA5
A
115 121Right-handed 310
Helix 6
AA6
A
130 134Right-handed 310
Helix 7
AA7
A
138 152Right-handed alpha
Helix 8
AA8
A
154 156Right-handed 310
Helix 9
AA9
A
166 180Right-handed alpha
Helix 10
AB1
A
202 219Right-handed alpha
Helix 11
AB2
A
231 237Right-handed alpha
Helix 12
AB3
B
18 22Right-handed 310
Helix 13
AB4
B
43 47Right-handed 310
Helix 14
AB5
B
59 71Right-handed alpha
Helix 15
AB6
B
84 89Right-handed 310
Helix 16
AB7
B
90 101Right-handed alpha
Helix 17
AB8
B
115 121Right-handed 310
Helix 18
AB9
B
130 134Right-handed 310
Helix 19
AC1
B
138 152Right-handed alpha
Helix 20
AC2
B
154 156Right-handed 310
Helix 21
AC3
B
166 180Right-handed alpha
Helix 22
AC4
B
202 219Right-handed alpha
Helix 23
AC5
B
231 238Right-handed alpha
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There are 2 sheets in PDB entry 5TGS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
5 15anti-parallel
Strand 3
A
25 31anti-parallel
Strand 4
A
77 81parallel
Strand 5
A
104 109parallel
Strand 6
A
123 126parallel
Strand 7
A
158 164parallel
Strand 8
A
185 189parallel
Strand 9
A
226 229parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
5 15anti-parallel
Strand 3
B
25 31anti-parallel
Strand 4
B
77 81parallel
Strand 5
B
104 109parallel
Strand 6
B
123 126parallel
Strand 7
B
158 164parallel
Strand 8
B
185 189parallel
Strand 9
B
226 229parallel
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