Analysis of interatomic Contacts of Structural Units in PDB entry:
5TH3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TH3 entry

There are 12 chains in PDB entry 5TH3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	ILE 226
B	MSE 1	ILE 226
C	MSE 1	ILE 226
D	MSE 1	ILE 226
H	G 3	T 14
h	A 25	G 37
I	C 1	T 14
i	A 25	C 36
J	G 1	T 14
j	A 25	G 37
K	C 2	T 14
k	A 25	C 37

There are 20 helices in PDB entry 5TH3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	25	Right-handed alpha
Helix 2	AA2	A	36	55	Right-handed alpha
Helix 3	AA3	A	110	120	Right-handed alpha
Helix 4	AA4	A	155	157	Right-handed 310
Helix 5	AA5	A	181	226	Right-handed alpha
Helix 6	AA6	B	2	25	Right-handed alpha
Helix 7	AA7	B	36	55	Right-handed alpha
Helix 8	AA8	B	110	120	Right-handed alpha
Helix 9	AA9	B	155	157	Right-handed 310
Helix 10	AB1	B	181	226	Right-handed alpha
Helix 11	AB2	C	2	25	Right-handed alpha
Helix 12	AB3	C	36	55	Right-handed alpha
Helix 13	AB4	C	110	120	Right-handed alpha
Helix 14	AB5	C	155	157	Right-handed 310
Helix 15	AB6	C	181	226	Right-handed alpha
Helix 16	AB7	D	2	25	Right-handed alpha
Helix 17	AB8	D	36	55	Right-handed alpha
Helix 18	AB9	D	110	120	Right-handed alpha
Helix 19	AC1	D	155	157	Right-handed 310
Helix 20	AC2	D	181	226	Right-handed alpha

There are 12 sheets in PDB entry 5TH3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	65	first strand
Strand 2	A	77	83	anti-parallel
Strand 3	A	86	98	anti-parallel
Strand 4	A	124	135	parallel
Strand 5	A	138	141	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	65	first strand
Strand 2	A	77	83	anti-parallel
Strand 3	A	86	98	anti-parallel
Strand 4	A	124	135	parallel
Strand 5	A	149	153	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	168	170	anti-parallel
Strand 3	A	162	164	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	65	first strand
Strand 2	B	77	83	anti-parallel
Strand 3	B	86	98	anti-parallel
Strand 4	B	124	135	parallel
Strand 5	B	138	141	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	65	first strand
Strand 2	B	77	83	anti-parallel
Strand 3	B	86	98	anti-parallel
Strand 4	B	124	135	parallel
Strand 5	B	149	153	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	109	first strand
Strand 2	B	168	170	anti-parallel
Strand 3	B	162	164	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	65	first strand
Strand 2	C	77	83	anti-parallel
Strand 3	C	86	98	anti-parallel
Strand 4	C	124	135	parallel
Strand 5	C	138	141	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	65	first strand
Strand 2	C	77	83	anti-parallel
Strand 3	C	86	98	anti-parallel
Strand 4	C	124	135	parallel
Strand 5	C	149	153	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	164	first strand
Strand 2	C	168	170	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	65	first strand
Strand 2	D	77	83	anti-parallel
Strand 3	D	86	98	anti-parallel
Strand 4	D	124	135	parallel
Strand 5	D	138	141	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	65	first strand
Strand 2	D	77	83	anti-parallel
Strand 3	D	86	98	anti-parallel
Strand 4	D	124	135	parallel
Strand 5	D	149	153	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	109	first strand
Strand 2	D	168	170	anti-parallel
Strand 3	D	162	164	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TH3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TH3