Analysis of interatomic Contacts of Structural Units in PDB entry:
5TH6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TH6 entry

There are 4 chains in PDB entry 5TH6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 41	TYR 443
B	ARG 42	TYR 443
C	THR 40	TYR 443
D	THR 40	TYR 443

There are 28 helices in PDB entry 5TH6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	52	Right-handed alpha
Helix 2	AA2	A	53	58	Right-handed alpha
Helix 3	AA3	A	68	79	Right-handed alpha
Helix 4	AA4	A	87	95	Right-handed alpha
Helix 5	AA5	A	133	151	Right-handed alpha
Helix 6	AA6	A	395	408	Right-handed alpha
Helix 7	AA7	A	432	443	Right-handed alpha
Helix 8	AA8	B	43	52	Right-handed alpha
Helix 9	AA9	B	53	58	Right-handed alpha
Helix 10	AB1	B	69	79	Right-handed alpha
Helix 11	AB2	B	91	96	Right-handed alpha
Helix 12	AB3	B	133	152	Right-handed alpha
Helix 13	AB4	B	395	407	Right-handed alpha
Helix 14	AB5	B	432	443	Right-handed alpha
Helix 15	AB6	C	41	52	Right-handed alpha
Helix 16	AB7	C	53	58	Right-handed alpha
Helix 17	AB8	C	68	79	Right-handed alpha
Helix 18	AB9	C	87	95	Right-handed alpha
Helix 19	AC1	C	133	152	Right-handed alpha
Helix 20	AC2	C	395	407	Right-handed alpha
Helix 21	AC3	C	432	443	Right-handed alpha
Helix 22	AC4	D	41	52	Right-handed alpha
Helix 23	AC5	D	53	58	Right-handed alpha
Helix 24	AC6	D	68	79	Right-handed alpha
Helix 25	AC7	D	87	95	Right-handed alpha
Helix 26	AC8	D	133	151	Right-handed alpha
Helix 27	AC9	D	395	407	Right-handed alpha
Helix 28	AD1	D	432	443	Right-handed alpha

There are 8 sheets in PDB entry 5TH6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	159	first strand
Strand 2	A	120	125	parallel
Strand 3	A	166	171	parallel
Strand 4	A	202	205	parallel
Strand 5	A	189	191	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	393	394	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	159	first strand
Strand 2	B	120	125	parallel
Strand 3	B	166	171	parallel
Strand 4	B	202	205	parallel
Strand 5	B	189	191	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	211	first strand
Strand 2	B	393	394	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	158	first strand
Strand 2	C	120	125	parallel
Strand 3	C	166	171	parallel
Strand 4	C	202	205	parallel
Strand 5	C	189	191	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	393	394	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	158	first strand
Strand 2	D	120	125	parallel
Strand 3	D	166	171	parallel
Strand 4	D	202	205	parallel
Strand 5	D	189	191	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	210	211	first strand
Strand 2	D	393	394	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TH6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TH6