Analysis of interatomic Contacts of Structural Units in PDB entry:
5TH9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5TH9 entry

There are 9 chains in PDB entry 5TH9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 1	CYS 214
H	GLN 1	SER 215
A	THR 40	TYR 443
M	ASP 1	CYS 214
I	GLN 1	SER 215
B	THR 40	TYR 443
N	ASP 1	ILE 106
J	GLN 1	GLY 106
C	ASP 41	TYR 443

There are 36 helices in PDB entry 5TH9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	79	83	Right-handed 310
Helix 2	AA2	L	121	126	Right-handed alpha
Helix 3	AA3	L	183	188	Right-handed alpha
Helix 4	AA4	H	86	90	Right-handed 310
Helix 5	AA5	H	158	160	Right-handed 310
Helix 6	AA6	H	189	192	Right-handed 310
Helix 7	AA7	H	203	206	Right-handed 310
Helix 8	AA8	A	41	52	Right-handed alpha
Helix 9	AA9	A	53	58	Right-handed alpha
Helix 10	AB1	A	67	79	Right-handed alpha
Helix 11	AB2	A	87	95	Right-handed alpha
Helix 12	AB3	A	133	150	Right-handed alpha
Helix 13	AB4	A	395	407	Right-handed alpha
Helix 14	AB5	A	432	441	Right-handed alpha
Helix 15	AB6	M	79	83	Right-handed 310
Helix 16	AB7	M	121	126	Right-handed alpha
Helix 17	AB8	M	183	187	Right-handed alpha
Helix 18	AB9	I	61	64	Right-handed 310
Helix 19	AC1	I	86	90	Right-handed 310
Helix 20	AC2	I	158	160	Right-handed 310
Helix 21	AC3	I	189	192	Right-handed 310
Helix 22	AC4	I	203	206	Right-handed 310
Helix 23	AC5	B	41	52	Right-handed alpha
Helix 24	AC6	B	67	78	Right-handed alpha
Helix 25	AC7	B	87	95	Right-handed alpha
Helix 26	AC8	B	133	151	Right-handed alpha
Helix 27	AC9	B	395	408	Right-handed alpha
Helix 28	AD1	B	432	443	Right-handed alpha
Helix 29	AD2	N	79	83	Right-handed 310
Helix 30	AD3	C	45	53	Right-handed alpha
Helix 31	AD4	C	68	70	Right-handed 310
Helix 32	AD5	C	71	79	Right-handed alpha
Helix 33	AD6	C	87	93	Right-handed alpha
Helix 34	AD7	C	133	152	Right-handed alpha
Helix 35	AD8	C	395	406	Right-handed alpha
Helix 36	AD9	C	432	440	Right-handed alpha

There are 31 sheets in PDB entry 5TH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	109	113	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	109	113	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	102	105	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	126	first strand
Strand 2	H	137	147	anti-parallel
Strand 3	H	178	187	anti-parallel
Strand 4	H	165	167	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	126	first strand
Strand 2	H	137	147	anti-parallel
Strand 3	H	178	187	anti-parallel
Strand 4	H	171	172	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	156	first strand
Strand 2	H	197	202	anti-parallel
Strand 3	H	207	212	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	187	191	parallel
Strand 3	A	202	205	anti-parallel
Strand 4	A	166	171	parallel
Strand 5	A	120	125	parallel
Strand 6	A	155	158	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	393	394	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	67	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	14	first strand
Strand 2	M	102	107	parallel
Strand 3	M	84	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	45	49	anti-parallel
Strand 6	M	53	54	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	114	118	first strand
Strand 2	M	129	139	anti-parallel
Strand 3	M	173	182	anti-parallel
Strand 4	M	161	163	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	153	154	first strand
Strand 2	M	144	150	anti-parallel
Strand 3	M	191	198	anti-parallel
Strand 4	M	205	210	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	109	113	parallel
Strand 3	I	91	98	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	122	126	first strand
Strand 2	I	137	147	anti-parallel
Strand 3	I	178	187	anti-parallel
Strand 4	I	165	167	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	122	126	first strand
Strand 2	I	137	147	anti-parallel
Strand 3	I	178	187	anti-parallel
Strand 4	I	171	172	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	153	156	first strand
Strand 2	I	197	202	anti-parallel
Strand 3	I	207	212	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	158	first strand
Strand 2	B	120	125	parallel
Strand 3	B	166	171	parallel
Strand 4	B	202	205	parallel
Strand 5	B	189	191	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	211	first strand
Strand 2	B	393	394	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	20	25	anti-parallel
Strand 3	N	70	74	anti-parallel
Strand 4	N	65	67	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	103	105	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	54	first strand
Strand 2	N	45	49	anti-parallel
Strand 3	N	33	38	anti-parallel
Strand 4	N	85	90	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	7	first strand
Strand 2	J	21	23	anti-parallel
Strand 3	J	77	80	anti-parallel
Strand 4	J	69	70	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	33	39	first strand
Strand 2	J	92	98	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	49	50	first strand
Strand 2	J	58	59	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	158	first strand
Strand 2	C	120	125	parallel
Strand 3	C	166	171	parallel
Strand 4	C	202	205	parallel
Strand 5	C	189	191	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	393	394	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5TH9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5TH9