Analysis of interatomic Contacts of Structural Units in PDB entry:
5THM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5THM entry

There are 31 chains in PDB entry 5THM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 4TYR 48
A
 GLN 50GLN 50
A
 TRP 52THR 59
A
 THR 61ASN 76
A
 LEU 78TYR 90
A
 PRO 92PRO 92
A
 ASN 94SER 95
A
 ARG 97GLY 128
A
 PHE 130LEU 165
A
 TRP 167ILE 168
A
 GLN 170ALA 207
A
 ALA 209GLN 224
A
 GLY 226LEU 249
A
 CYS 252LEU 253
A
 SER 255SER 255
A
 PRO 257ARG 266
A
 PHE 268ILE 301
A
 SER 303GLY 304
A
 PHE 306LEU 328
A
 GLU 330ARG 331
A
 SER 333THR 357
A
 THR 359THR 359
A
 ASP 362ARG 368
A
 ILE 370ILE 370
A
 GLN 372ARG 409
A
 TYR 411GLY 412
A
 SER 414GLU 426
A
 GLY 428LEU 488
A
 TYR 490PHE 495
A
 ASP 497GLU 502
A
 PHE 504PRO 523
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5THM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 41Right-handed 310
Helix 2
AA2
A
115 119Right-handed 310
Helix 3
AA3
A
121 128Right-handed alpha
Helix 4
AA4
A
139 145Right-handed alpha
Helix 5
AA5
A
155 172Right-handed alpha
Helix 6
AA6
A
173 175Right-handed 310
Helix 7
AA7
A
188 199Right-handed alpha
Helix 8
AA8
A
202 206Right-handed 310
Helix 9
AA9
A
226 238Right-handed alpha
Helix 10
AB1
A
245 255Right-handed alpha
Helix 11
AB2
A
257 264Right-handed alpha
Helix 12
AB3
A
265 269Right-handed 310
Helix 13
AB4
A
296 304Right-handed alpha
Helix 14
AB5
A
320 325Right-handed alpha
Helix 15
AB6
A
326 329Right-handed 310
Helix 16
AB7
A
335 338Right-handed 310
Helix 17
AB8
A
339 352Right-handed alpha
Helix 18
AB9
A
359 376Right-handed alpha
Helix 19
AC1
A
384 397Right-handed alpha
Helix 20
AC2
A
397 412Right-handed alpha
Helix 21
AC3
A
428 435Right-handed alpha
Helix 22
AC4
A
448 453Right-handed alpha
Helix 23
AC5
A
463 483Right-handed alpha
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There are 4 sheets in PDB entry 5THM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
14 17anti-parallel
Strand 3
A
56 57parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
24 31anti-parallel
Strand 3
A
86 92anti-parallel
Strand 4
A
131 135anti-parallel
Strand 5
A
100 106parallel
Strand 6
A
177 187parallel
Strand 7
A
209 213parallel
Strand 8
A
311 316parallel
Strand 9
A
416 422parallel
Strand 10
A
504 510parallel
Strand 11
A
513 519anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
78 79anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 490first strand
Strand 2
A
493 494anti-parallel
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