Analysis of interatomic Contacts of Structural Units in PDB entry:
5THP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5THP entry

There are 9 chains in PDB entry 5THP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 2	SER 133
B	CYS 1	PHE 122
C	LEU 172	SER 363
D	PHE 2	SER 133
E	CYS 1	PHE 122
F	LEU 172	ILE 364
G	PHE 2	SER 133
H	CYS 1	PHE 122
I	ILE 173	LEU 320

There are 81 helices in PDB entry 5THP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	33	Right-handed alpha
Helix 2	AA2	A	46	61	Right-handed alpha
Helix 3	AA3	B	21	29	Right-handed alpha
Helix 4	AA4	B	45	56	Right-handed alpha
Helix 5	AA5	C	189	200	Right-handed alpha
Helix 6	AA6	C	231	242	Right-handed alpha
Helix 7	AA7	C	251	262	Right-handed alpha
Helix 8	AA8	C	265	269	Right-handed 310
Helix 9	AA9	C	291	301	Right-handed alpha
Helix 10	AB1	C	312	318	Right-handed alpha
Helix 11	AB2	C	322	333	Right-handed alpha
Helix 12	AB3	C	336	340	Right-handed 310
Helix 13	AB4	C	346	348	Right-handed 310
Helix 14	AB5	C	349	360	Right-handed alpha
Helix 15	AB6	D	24	33	Right-handed alpha
Helix 16	AB7	D	46	61	Right-handed alpha
Helix 17	AB8	D	109	112	Right-handed 310
Helix 18	AB9	E	21	29	Right-handed alpha
Helix 19	AC1	E	43	58	Right-handed alpha
Helix 20	AC2	F	187	202	Right-handed alpha
Helix 21	AC3	F	231	242	Right-handed alpha
Helix 22	AC4	F	251	262	Right-handed alpha
Helix 23	AC5	F	265	269	Right-handed 310
Helix 24	AC6	F	291	302	Right-handed alpha
Helix 25	AC7	F	312	318	Right-handed alpha
Helix 26	AC8	F	322	333	Right-handed alpha
Helix 27	AC9	F	349	358	Right-handed alpha
Helix 28	AD1	F	359	361	Right-handed 310
Helix 29	AD2	G	24	34	Right-handed alpha
Helix 30	AD3	G	46	61	Right-handed alpha
Helix 31	AD4	H	22	29	Right-handed alpha
Helix 32	AD5	H	43	57	Right-handed alpha
Helix 33	AD6	I	187	199	Right-handed alpha
Helix 34	AD7	I	231	242	Right-handed alpha
Helix 35	AD8	I	251	262	Right-handed alpha
Helix 36	AD9	I	265	269	Right-handed 310
Helix 37	AE1	I	291	301	Right-handed alpha
Helix 38	AE2	I	312	318	Right-handed alpha
Helix 39	AE3	I	322	333	Right-handed alpha
Helix 40	AE4	I	347	349	Right-handed 310
Helix 41	AE5	I	350	360	Right-handed alpha
Helix 42	AE6	J	24	34	Right-handed alpha
Helix 43	AE7	J	46	61	Right-handed alpha
Helix 44	AE8	K	21	26	Right-handed alpha
Helix 45	AE9	K	43	53	Right-handed alpha
Helix 46	AF1	L	187	200	Right-handed alpha
Helix 47	AF2	L	231	242	Right-handed alpha
Helix 48	AF3	L	251	262	Right-handed alpha
Helix 49	AF4	L	265	269	Right-handed 310
Helix 50	AF5	L	291	302	Right-handed alpha
Helix 51	AF6	L	312	318	Right-handed alpha
Helix 52	AF7	L	322	333	Right-handed alpha
Helix 53	AF8	L	346	348	Right-handed 310
Helix 54	AF9	L	349	358	Right-handed alpha
Helix 55	AG1	M	24	33	Right-handed alpha
Helix 56	AG2	M	46	58	Right-handed alpha
Helix 57	AG3	M	110	112	Right-handed 310
Helix 58	AG4	N	21	29	Right-handed alpha
Helix 59	AG5	N	43	56	Right-handed alpha
Helix 60	AG6	N	70	74	Right-handed 310
Helix 61	AG7	O	187	202	Right-handed alpha
Helix 62	AG8	O	231	242	Right-handed alpha
Helix 63	AG9	O	251	262	Right-handed alpha
Helix 64	AH1	O	291	302	Right-handed alpha
Helix 65	AH2	O	312	318	Right-handed alpha
Helix 66	AH3	O	322	333	Right-handed alpha
Helix 67	AH4	O	336	339	Right-handed 310
Helix 68	AH5	O	346	348	Right-handed 310
Helix 69	AH6	O	349	361	Right-handed alpha
Helix 70	AH7	P	24	33	Right-handed alpha
Helix 71	AH8	P	46	60	Right-handed alpha
Helix 72	AH9	Q	21	29	Right-handed alpha
Helix 73	AI1	Q	43	55	Right-handed alpha
Helix 74	AI2	R	187	200	Right-handed alpha
Helix 75	AI3	R	231	241	Right-handed alpha
Helix 76	AI4	R	251	262	Right-handed alpha
Helix 77	AI5	R	265	269	Right-handed 310
Helix 78	AI6	R	291	302	Right-handed alpha
Helix 79	AI7	R	312	318	Right-handed alpha
Helix 80	AI8	R	322	333	Right-handed alpha
Helix 81	AI9	R	349	360	Right-handed alpha

There are 34 sheets in PDB entry 5THP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	A	14	19	anti-parallel
Strand 3	A	127	131	anti-parallel
Strand 4	A	40	41	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	69	first strand
Strand 2	A	104	107	anti-parallel
Strand 3	A	116	119	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	20	first strand
Strand 2	B	116	121	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	94	100	anti-parallel
Strand 3	B	105	111	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	224	first strand
Strand 2	C	211	216	anti-parallel
Strand 3	C	174	180	parallel
Strand 4	C	276	280	parallel
Strand 5	C	304	307	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	10	first strand
Strand 2	D	14	23	anti-parallel
Strand 3	D	125	132	anti-parallel
Strand 4	D	40	41	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	69	first strand
Strand 2	D	104	107	anti-parallel
Strand 3	D	116	119	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	73	first strand
Strand 2	E	77	78	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	11	20	anti-parallel
Strand 3	E	116	120	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	68	first strand
Strand 2	E	94	100	anti-parallel
Strand 3	E	105	111	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	224	first strand
Strand 2	F	210	216	anti-parallel
Strand 3	F	174	180	parallel
Strand 4	F	276	282	parallel
Strand 5	F	305	310	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	11	first strand
Strand 2	G	14	23	anti-parallel
Strand 3	G	125	132	anti-parallel
Strand 4	G	40	41	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	119	first strand
Strand 2	G	104	108	anti-parallel
Strand 3	G	67	73	anti-parallel
Strand 4	H	77	78	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	14	first strand
Strand 2	H	120	121	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	21	first strand
Strand 2	H	115	118	anti-parallel
Strand 3	H	62	68	parallel
Strand 4	H	94	100	anti-parallel
Strand 5	H	105	111	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	220	224	first strand
Strand 2	I	210	216	anti-parallel
Strand 3	I	174	180	parallel
Strand 4	I	276	281	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	309	311	first strand
Strand 2	I	342	344	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	11	first strand
Strand 2	J	14	19	anti-parallel
Strand 3	J	127	131	anti-parallel
Strand 4	J	40	41	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	116	119	first strand
Strand 2	J	104	108	anti-parallel
Strand 3	J	67	74	anti-parallel
Strand 4	K	76	77	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	16	20	first strand
Strand 2	K	116	118	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	63	68	first strand
Strand 2	K	94	101	anti-parallel
Strand 3	K	104	111	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	220	224	first strand
Strand 2	L	211	216	anti-parallel
Strand 3	L	175	180	parallel
Strand 4	L	277	281	parallel
Strand 5	L	305	307	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	10	first strand
Strand 2	M	15	16	anti-parallel
Strand 3	M	129	131	anti-parallel
Strand 4	M	40	41	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	23	first strand
Strand 2	M	125	127	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	67	69	first strand
Strand 2	M	104	108	anti-parallel
Strand 3	M	116	119	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	73	74	first strand
Strand 2	N	76	77	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	6	8	first strand
Strand 2	N	11	20	anti-parallel
Strand 3	N	116	120	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	63	68	first strand
Strand 2	N	94	100	anti-parallel
Strand 3	N	105	111	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	221	224	first strand
Strand 2	O	210	216	anti-parallel
Strand 3	O	174	180	parallel
Strand 4	O	276	281	parallel
Strand 5	O	304	311	parallel
Strand 6	O	341	344	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	9	11	first strand
Strand 2	P	14	23	anti-parallel
Strand 3	P	125	132	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	67	69	first strand
Strand 2	P	104	108	anti-parallel
Strand 3	P	116	119	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	6	8	first strand
Strand 2	Q	11	20	anti-parallel
Strand 3	Q	116	121	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	62	68	first strand
Strand 2	Q	94	100	anti-parallel
Strand 3	Q	105	111	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	220	224	first strand
Strand 2	R	212	216	anti-parallel
Strand 3	R	176	180	parallel
Strand 4	R	276	282	parallel
Strand 5	R	304	311	parallel
Strand 6	R	342	344	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5THP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5THP