Analysis of interatomic Contacts of Structural Units in PDB entry:
5THQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5THQ entry

There are 8 chains in PDB entry 5THQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	LEU 5	SER 252
B	LEU 3	SER 252
C	LEU 3	SER 252
F	LEU 3	SER 252
A	LEU 5	SER 252
E	LEU 3	SER 252
H	LEU 3	SER 252
D	LEU 3	SER 252

There are 96 helices in PDB entry 5THQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	19	32	Right-handed alpha
Helix 2	AA2	G	44	58	Right-handed alpha
Helix 3	AA3	G	70	85	Right-handed alpha
Helix 4	AA4	G	102	106	Right-handed 310
Helix 5	AA5	G	107	119	Right-handed alpha
Helix 6	AA6	G	119	134	Right-handed alpha
Helix 7	AA7	G	145	150	Right-handed alpha
Helix 8	AA8	G	154	176	Right-handed alpha
Helix 9	AA9	G	192	197	Right-handed alpha
Helix 10	AB1	G	199	214	Right-handed alpha
Helix 11	AB2	G	221	234	Right-handed alpha
Helix 12	AB3	G	235	238	Right-handed 310
Helix 13	AB4	B	19	32	Right-handed alpha
Helix 14	AB5	B	44	57	Right-handed alpha
Helix 15	AB6	B	70	85	Right-handed alpha
Helix 16	AB7	B	102	106	Right-handed 310
Helix 17	AB8	B	107	119	Right-handed alpha
Helix 18	AB9	B	119	134	Right-handed alpha
Helix 19	AC1	B	145	150	Right-handed alpha
Helix 20	AC2	B	154	176	Right-handed alpha
Helix 21	AC3	B	192	197	Right-handed alpha
Helix 22	AC4	B	200	214	Right-handed alpha
Helix 23	AC5	B	221	234	Right-handed alpha
Helix 24	AC6	B	235	238	Right-handed 310
Helix 25	AC7	C	19	32	Right-handed alpha
Helix 26	AC8	C	44	57	Right-handed alpha
Helix 27	AC9	C	70	85	Right-handed alpha
Helix 28	AD1	C	102	106	Right-handed 310
Helix 29	AD2	C	107	119	Right-handed alpha
Helix 30	AD3	C	119	134	Right-handed alpha
Helix 31	AD4	C	145	150	Right-handed alpha
Helix 32	AD5	C	154	176	Right-handed alpha
Helix 33	AD6	C	192	197	Right-handed alpha
Helix 34	AD7	C	202	212	Right-handed alpha
Helix 35	AD8	C	221	234	Right-handed alpha
Helix 36	AD9	C	235	238	Right-handed 310
Helix 37	AE1	F	19	32	Right-handed alpha
Helix 38	AE2	F	44	55	Right-handed alpha
Helix 39	AE3	F	70	85	Right-handed alpha
Helix 40	AE4	F	102	106	Right-handed 310
Helix 41	AE5	F	107	119	Right-handed alpha
Helix 42	AE6	F	119	134	Right-handed alpha
Helix 43	AE7	F	145	150	Right-handed alpha
Helix 44	AE8	F	154	176	Right-handed alpha
Helix 45	AE9	F	192	197	Right-handed alpha
Helix 46	AF1	F	205	213	Right-handed alpha
Helix 47	AF2	F	221	234	Right-handed alpha
Helix 48	AF3	F	235	238	Right-handed 310
Helix 49	AF4	A	19	32	Right-handed alpha
Helix 50	AF5	A	44	57	Right-handed alpha
Helix 51	AF6	A	70	85	Right-handed alpha
Helix 52	AF7	A	102	106	Right-handed 310
Helix 53	AF8	A	107	119	Right-handed alpha
Helix 54	AF9	A	119	134	Right-handed alpha
Helix 55	AG1	A	145	150	Right-handed alpha
Helix 56	AG2	A	154	176	Right-handed alpha
Helix 57	AG3	A	192	197	Right-handed alpha
Helix 58	AG4	A	201	214	Right-handed alpha
Helix 59	AG5	A	221	234	Right-handed alpha
Helix 60	AG6	A	235	238	Right-handed 310
Helix 61	AG7	E	19	32	Right-handed alpha
Helix 62	AG8	E	44	57	Right-handed alpha
Helix 63	AG9	E	70	85	Right-handed alpha
Helix 64	AH1	E	102	106	Right-handed 310
Helix 65	AH2	E	107	119	Right-handed alpha
Helix 66	AH3	E	119	134	Right-handed alpha
Helix 67	AH4	E	145	150	Right-handed alpha
Helix 68	AH5	E	154	176	Right-handed alpha
Helix 69	AH6	E	192	197	Right-handed alpha
Helix 70	AH7	E	201	212	Right-handed alpha
Helix 71	AH8	E	221	234	Right-handed alpha
Helix 72	AH9	E	235	238	Right-handed 310
Helix 73	AI1	H	19	32	Right-handed alpha
Helix 74	AI2	H	44	56	Right-handed alpha
Helix 75	AI3	H	70	85	Right-handed alpha
Helix 76	AI4	H	102	106	Right-handed 310
Helix 77	AI5	H	107	119	Right-handed alpha
Helix 78	AI6	H	119	134	Right-handed alpha
Helix 79	AI7	H	145	150	Right-handed alpha
Helix 80	AI8	H	154	176	Right-handed alpha
Helix 81	AI9	H	192	197	Right-handed alpha
Helix 82	AJ1	H	201	214	Right-handed alpha
Helix 83	AJ2	H	221	234	Right-handed alpha
Helix 84	AJ3	H	235	238	Right-handed 310
Helix 85	AJ4	D	19	32	Right-handed alpha
Helix 86	AJ5	D	44	57	Right-handed alpha
Helix 87	AJ6	D	70	85	Right-handed alpha
Helix 88	AJ7	D	102	106	Right-handed 310
Helix 89	AJ8	D	107	119	Right-handed alpha
Helix 90	AJ9	D	119	134	Right-handed alpha
Helix 91	AK1	D	145	150	Right-handed alpha
Helix 92	AK2	D	154	176	Right-handed alpha
Helix 93	AK3	D	192	197	Right-handed alpha
Helix 94	AK4	D	201	214	Right-handed alpha
Helix 95	AK5	D	221	234	Right-handed alpha
Helix 96	AK6	D	235	238	Right-handed 310

There are 8 sheets in PDB entry 5THQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	65	first strand
Strand 2	G	35	40	parallel
Strand 3	G	11	15	parallel
Strand 4	G	90	93	parallel
Strand 5	G	137	144	parallel
Strand 6	G	180	187	parallel
Strand 7	G	244	247	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	65	first strand
Strand 2	B	35	40	parallel
Strand 3	B	11	14	parallel
Strand 4	B	90	93	parallel
Strand 5	B	137	144	parallel
Strand 6	B	180	187	parallel
Strand 7	B	244	247	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	65	first strand
Strand 2	C	35	40	parallel
Strand 3	C	11	14	parallel
Strand 4	C	90	93	parallel
Strand 5	C	137	144	parallel
Strand 6	C	180	187	parallel
Strand 7	C	244	247	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	65	first strand
Strand 2	F	35	40	parallel
Strand 3	F	11	14	parallel
Strand 4	F	90	93	parallel
Strand 5	F	137	144	parallel
Strand 6	F	180	187	parallel
Strand 7	F	244	247	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	65	first strand
Strand 2	A	35	40	parallel
Strand 3	A	11	14	parallel
Strand 4	A	90	93	parallel
Strand 5	A	137	144	parallel
Strand 6	A	180	187	parallel
Strand 7	A	244	247	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	65	first strand
Strand 2	E	35	40	parallel
Strand 3	E	11	14	parallel
Strand 4	E	90	93	parallel
Strand 5	E	137	144	parallel
Strand 6	E	180	187	parallel
Strand 7	E	244	247	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	62	65	first strand
Strand 2	H	35	40	parallel
Strand 3	H	11	14	parallel
Strand 4	H	90	93	parallel
Strand 5	H	137	144	parallel
Strand 6	H	180	187	parallel
Strand 7	H	244	247	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	65	first strand
Strand 2	D	35	40	parallel
Strand 3	D	11	14	parallel
Strand 4	D	90	93	parallel
Strand 5	D	137	144	parallel
Strand 6	D	180	187	parallel
Strand 7	D	243	247	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5THQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5THQ