Analysis of interatomic Contacts of Structural Units in PDB entry:
5THR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5THR entry

There are 21 chains in PDB entry 5THR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 520ASP 664
B
GLY 521ASP 664
C
GLY 521ASP 664
D
ALA 31VAL 505
E
ALA 31VAL 505
F
ALA 31VAL 505
G
LYS 1PHE 98
H
LYS 1PHE 98
I
LYS 1VAL 97
J
ASP 1ILE 108
K
ASP 1ILE 108
L
ASP 1ILE 108
M
GLU 1SER 127
N
GLU 1SER 127
O
GLU 1SER 127
P
GLN 1SER 131
Q
ASP 1VAL 107
R
GLN 1SER 131
S
ASP 1VAL 107
T
GLN 1SER 131
U
ASP 1VAL 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5THR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
531 543Right-handed alpha
Helix 2
AA2
A
572 595Right-handed alpha
Helix 3
AA3
A
619 623Right-handed 310
Helix 4
AA4
A
628 661Right-handed alpha
Helix 5
AA5
B
531 543Right-handed alpha
Helix 6
AA6
B
572 595Right-handed alpha
Helix 7
AA7
B
619 623Right-handed 310
Helix 8
AA8
B
628 661Right-handed alpha
Helix 9
AA9
C
531 543Right-handed alpha
Helix 10
AB1
C
572 595Right-handed alpha
Helix 11
AB2
C
619 623Right-handed 310
Helix 12
AB3
C
628 661Right-handed alpha
Helix 13
AB4
D
100 115Right-handed alpha
Helix 14
AB5
D
335 353Right-handed alpha
Helix 15
AB6
D
368 373Right-handed alpha
Helix 16
AB7
D
474 483Right-handed alpha
Helix 17
AB8
E
100 115Right-handed alpha
Helix 18
AB9
E
335 353Right-handed alpha
Helix 19
AC1
E
368 373Right-handed alpha
Helix 20
AC2
E
474 483Right-handed alpha
Helix 21
AC3
F
100 115Right-handed alpha
Helix 22
AC4
F
335 353Right-handed alpha
Helix 23
AC5
F
368 373Right-handed alpha
Helix 24
AC6
F
474 483Right-handed alpha
Helix 25
AC7
M
87 91Right-handed 310
Helix 26
AC8
N
87 91Right-handed 310
Helix 27
AC9
O
87 91Right-handed 310
Helix 28
AD1
P
90 94Right-handed 310
Helix 29
AD2
R
90 94Right-handed 310
Helix 30
AD3
T
90 94Right-handed 310
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There are 72 sheets in PDB entry 5THR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1, AH2, AH3, AH4, AH5, AH6, AH7, AH8, AH9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
35 36first strand
Strand 2
D
498 499anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
46 47first strand
Strand 2
D
488 490anti-parallel
Strand 3
D
224 228anti-parallel
Strand 4
D
242 245anti-parallel
Strand 5
D
83 86anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
53 55first strand
Strand 2
D
216 218anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
91 93first strand
Strand 2
D
237 239anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
120 125first strand
Strand 2
D
197 202anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
271 272first strand
Strand 2
D
284 287anti-parallel
Strand 3
D
452 456anti-parallel
Strand 4
D
465 469anti-parallel
Strand 5
D
358 361parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
414 416first strand
Strand 2
D
331 333anti-parallel
Strand 3
D
292 296anti-parallel
Strand 4
D
445 449anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
35 36first strand
Strand 2
E
498 499anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
46 47first strand
Strand 2
E
488 490anti-parallel
Strand 3
E
224 228anti-parallel
Strand 4
E
242 245anti-parallel
Strand 5
E
83 86anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
53 55first strand
Strand 2
E
216 218anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
91 93first strand
Strand 2
E
237 239anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
120 125first strand
Strand 2
E
197 202anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
271 272first strand
Strand 2
E
284 287anti-parallel
Strand 3
E
452 456anti-parallel
Strand 4
E
465 469anti-parallel
Strand 5
E
358 361parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
414 416first strand
Strand 2
E
331 333anti-parallel
Strand 3
E
292 296anti-parallel
Strand 4
E
445 449anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
35 36first strand
Strand 2
F
498 499anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
46 47first strand
Strand 2
F
488 490anti-parallel
Strand 3
F
224 228anti-parallel
Strand 4
F
242 245anti-parallel
Strand 5
F
83 86anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
53 55first strand
Strand 2
F
216 218anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
91 93first strand
Strand 2
F
237 239anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
120 125first strand
Strand 2
F
197 202anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
271 272first strand
Strand 2
F
284 287anti-parallel
Strand 3
F
452 456anti-parallel
Strand 4
F
465 469anti-parallel
Strand 5
F
358 361parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
414 416first strand
Strand 2
F
331 333anti-parallel
Strand 3
F
292 296anti-parallel
Strand 4
F
445 449anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
2 6first strand
Strand 2
G
93 97parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
12 14first strand
Strand 2
G
69 71anti-parallel
Strand 3
G
55 56anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
44 45first strand
Strand 2
G
35 39anti-parallel
Strand 3
G
27 29anti-parallel
Strand 4
G
83 85anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
2 6first strand
Strand 2
H
93 97parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
12 14first strand
Strand 2
H
69 71anti-parallel
Strand 3
H
55 56anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
44 45first strand
Strand 2
H
35 39anti-parallel
Strand 3
H
27 29anti-parallel
Strand 4
H
83 85anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
2 5first strand
Strand 2
I
93 96parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
12 14first strand
Strand 2
I
69 71anti-parallel
Strand 3
I
55 56anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
44 45first strand
Strand 2
I
35 39anti-parallel
Strand 3
I
27 29anti-parallel
Strand 4
I
83 85anti-parallel
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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
21 23first strand
Strand 2
J
71 75anti-parallel
Strand 3
J
62 65anti-parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
44 49first strand
Strand 2
J
33 38anti-parallel
Strand 3
J
85 90anti-parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
21 23first strand
Strand 2
K
71 75anti-parallel
Strand 3
K
62 65anti-parallel
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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
44 49first strand
Strand 2
K
33 38anti-parallel
Strand 3
K
85 90anti-parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
21 23first strand
Strand 2
L
71 75anti-parallel
Strand 3
L
62 65anti-parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
44 49first strand
Strand 2
L
33 38anti-parallel
Strand 3
L
85 90anti-parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
2 6first strand
Strand 2
M
22 26anti-parallel
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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
11 12first strand
Strand 2
M
122 126parallel
Strand 3
M
92 97anti-parallel
Strand 4
M
33 37anti-parallel
Strand 5
M
47 52anti-parallel
Strand 6
M
57 58anti-parallel
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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
18 20first strand
Strand 2
M
78 83anti-parallel
Strand 3
M
68 73anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
2 6first strand
Strand 2
N
22 26anti-parallel
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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
11 12first strand
Strand 2
N
122 126parallel
Strand 3
N
92 97anti-parallel
Strand 4
N
33 37anti-parallel
Strand 5
N
47 52anti-parallel
Strand 6
N
57 58anti-parallel
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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
18 20first strand
Strand 2
N
78 83anti-parallel
Strand 3
N
68 73anti-parallel
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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
2 6first strand
Strand 2
O
22 26anti-parallel
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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
11 12first strand
Strand 2
O
122 126parallel
Strand 3
O
92 97anti-parallel
Strand 4
O
33 37anti-parallel
Strand 5
O
47 52anti-parallel
Strand 6
O
57 58anti-parallel
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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
18 20first strand
Strand 2
O
78 83anti-parallel
Strand 3
O
68 73anti-parallel
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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
4 6first strand
Strand 2
P
22 24anti-parallel
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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
18 20first strand
Strand 2
P
84 86anti-parallel
Strand 3
P
67 68anti-parallel
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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
36 40first strand
Strand 2
P
46 51anti-parallel
Strand 3
P
58 59anti-parallel
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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
71 72first strand
Strand 2
P
81 82anti-parallel
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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
95 97first strand
Strand 2
P
126 128anti-parallel
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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
112 113first strand
Strand 2
P
116 117anti-parallel
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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
5 7first strand
Strand 2
Q
19 24anti-parallel
Strand 3
Q
71 76anti-parallel
Strand 4
Q
66 68anti-parallel
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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
10 12first strand
Strand 2
Q
103 106parallel
Strand 3
Q
86 87anti-parallel
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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
34 36first strand
Strand 2
Q
89 91anti-parallel
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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
4 6first strand
Strand 2
R
22 24anti-parallel
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There are 3 strands in AG2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
18 20first strand
Strand 2
R
84 86anti-parallel
Strand 3
R
67 68anti-parallel
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There are 3 strands in AG3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
36 40first strand
Strand 2
R
46 51anti-parallel
Strand 3
R
58 59anti-parallel
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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
71 72first strand
Strand 2
R
81 82anti-parallel
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There are 2 strands in AG5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
95 97first strand
Strand 2
R
126 128anti-parallel
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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
112 113first strand
Strand 2
R
116 117anti-parallel
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There are 4 strands in AG7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
5 7first strand
Strand 2
S
19 24anti-parallel
Strand 3
S
71 76anti-parallel
Strand 4
S
66 68anti-parallel
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There are 3 strands in AG8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
10 12first strand
Strand 2
S
103 106parallel
Strand 3
S
86 87anti-parallel
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There are 2 strands in AG9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
34 36first strand
Strand 2
S
89 91anti-parallel
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There are 2 strands in AH1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
4 6first strand
Strand 2
T
22 24anti-parallel
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There are 3 strands in AH2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
18 20first strand
Strand 2
T
84 86anti-parallel
Strand 3
T
67 68anti-parallel
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There are 3 strands in AH3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
36 40first strand
Strand 2
T
46 51anti-parallel
Strand 3
T
58 59anti-parallel
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There are 2 strands in AH4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
71 72first strand
Strand 2
T
81 82anti-parallel
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There are 2 strands in AH5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
95 97first strand
Strand 2
T
126 128anti-parallel
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There are 2 strands in AH6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
112 113first strand
Strand 2
T
116 117anti-parallel
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There are 4 strands in AH7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
5 7first strand
Strand 2
U
19 24anti-parallel
Strand 3
U
71 76anti-parallel
Strand 4
U
66 68anti-parallel
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There are 3 strands in AH8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
10 12first strand
Strand 2
U
103 106parallel
Strand 3
U
86 87anti-parallel
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There are 2 strands in AH9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
34 36first strand
Strand 2
U
89 91anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il