Analysis of interatomic Contacts of Structural Units in PDB entry:
5THT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5THT entry

There are 4 chains in PDB entry 5THT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 14GLU 379
B
 VAL 15ILE 378
C
 LEU 14VAL 377
D
 LEU 14VAL 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 5THT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 29Right-handed alpha
Helix 2
AA2
A
36 48Right-handed alpha
Helix 3
AA3
A
49 54Right-handed 310
Helix 4
AA4
A
63 68Right-handed alpha
Helix 5
AA5
A
72 84Right-handed alpha
Helix 6
AA6
A
90 97Right-handed 310
Helix 7
AA7
A
107 128Right-handed alpha
Helix 8
AA8
A
156 166Right-handed alpha
Helix 9
AA9
A
182 189Right-handed alpha
Helix 10
AB1
A
219 223Right-handed 310
Helix 11
AB2
A
236 256Right-handed alpha
Helix 12
AB3
A
265 269Right-handed 310
Helix 13
AB4
A
280 293Right-handed alpha
Helix 14
AB5
A
307 324Right-handed alpha
Helix 15
AB6
A
336 340Right-handed 310
Helix 16
AB7
A
358 377Right-handed alpha
Helix 17
AB8
B
21 30Right-handed alpha
Helix 18
AB9
B
36 48Right-handed alpha
Helix 19
AC1
B
50 54Right-handed 310
Helix 20
AC2
B
63 68Right-handed alpha
Helix 21
AC3
B
72 83Right-handed alpha
Helix 22
AC4
B
93 97Right-handed 310
Helix 23
AC5
B
107 128Right-handed alpha
Helix 24
AC6
B
156 166Right-handed alpha
Helix 25
AC7
B
182 189Right-handed alpha
Helix 26
AC8
B
219 223Right-handed 310
Helix 27
AC9
B
236 256Right-handed alpha
Helix 28
AD1
B
265 269Right-handed 310
Helix 29
AD2
B
280 293Right-handed alpha
Helix 30
AD3
B
307 323Right-handed alpha
Helix 31
AD4
B
336 340Right-handed 310
Helix 32
AD5
B
358 377Right-handed alpha
Helix 33
AD6
C
21 29Right-handed alpha
Helix 34
AD7
C
36 48Right-handed alpha
Helix 35
AD8
C
49 54Right-handed 310
Helix 36
AD9
C
63 68Right-handed alpha
Helix 37
AE1
C
72 85Right-handed alpha
Helix 38
AE2
C
107 128Right-handed alpha
Helix 39
AE3
C
156 166Right-handed alpha
Helix 40
AE4
C
182 189Right-handed alpha
Helix 41
AE5
C
219 223Right-handed 310
Helix 42
AE6
C
236 256Right-handed alpha
Helix 43
AE7
C
280 293Right-handed alpha
Helix 44
AE8
C
307 323Right-handed alpha
Helix 45
AE9
C
336 341Right-handed 310
Helix 46
AF1
C
358 375Right-handed alpha
Helix 47
AF2
D
21 29Right-handed alpha
Helix 48
AF3
D
36 48Right-handed alpha
Helix 49
AF4
D
49 54Right-handed 310
Helix 50
AF5
D
63 69Right-handed alpha
Helix 51
AF6
D
72 84Right-handed alpha
Helix 52
AF7
D
107 128Right-handed alpha
Helix 53
AF8
D
156 166Right-handed alpha
Helix 54
AF9
D
182 189Right-handed alpha
Helix 55
AG1
D
219 223Right-handed 310
Helix 56
AG2
D
236 256Right-handed alpha
Helix 57
AG3
D
280 293Right-handed alpha
Helix 58
AG4
D
307 324Right-handed alpha
Helix 59
AG5
D
336 341Right-handed 310
Helix 60
AG6
D
358 373Right-handed alpha
Helix 61
AG7
D
374 376Right-handed 310
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There are 4 sheets in PDB entry 5THT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
17 19parallel
Strand 3
A
133 136parallel
Strand 4
A
297 301parallel
Strand 5
A
259 263parallel
Strand 6
A
172 176parallel
Strand 7
A
195 202parallel
Strand 8
A
226 231parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 57first strand
Strand 2
B
17 19parallel
Strand 3
B
133 136parallel
Strand 4
B
297 301parallel
Strand 5
B
259 263parallel
Strand 6
B
172 176parallel
Strand 7
B
195 202parallel
Strand 8
B
226 231parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 57first strand
Strand 2
C
17 19parallel
Strand 3
C
133 136parallel
Strand 4
C
297 301parallel
Strand 5
C
259 263parallel
Strand 6
C
172 176parallel
Strand 7
C
195 202parallel
Strand 8
C
226 231parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 57first strand
Strand 2
D
17 19parallel
Strand 3
D
133 136parallel
Strand 4
D
297 301parallel
Strand 5
D
259 263parallel
Strand 6
D
172 176parallel
Strand 7
D
195 202parallel
Strand 8
D
226 231parallel
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